Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02040 and SMc02041 are separated by 1 nucleotides SMc02041 and SMc02042 are separated by 30 nucleotides SMc02042 and SMc02043 overlap by 4 nucleotides SMc02043 and SMc02044 overlap by 4 nucleotides
SMc02039: SMc02039 - oxidoreductase, at 2,745,430 to 2,746,128
SMc02039
SMc02040: SMc02040 - oxidoreductase, at 2,745,726 to 2,746,157
SMc02040
SMc02041: SMc02041 - short chain dehydrogenase, at 2,746,159 to 2,746,923
SMc02041
SMc02042: SMc02042 - glucose-6-phosphate isomerase, at 2,746,954 to 2,747,598
SMc02042
SMc02043: SMc02043 - KHG/KDPG aldolase, at 2,747,595 to 2,748,248
SMc02043
SMc02044: SMc02044 - hypothetical protein, at 2,748,245 to 2,749,198
SMc02044
Position (kb)
2746
2747
2748 Strain fitness (log2 ratio)
-2
-1
0
1 at 2746.092 kb on + strand at 2746.477 kb on + strand, within SMc02041 at 2746.844 kb on + strand, within SMc02041 at 2746.844 kb on + strand, within SMc02041 at 2746.845 kb on - strand, within SMc02041 at 2746.849 kb on + strand at 2746.849 kb on + strand at 2746.940 kb on + strand at 2746.941 kb on - strand at 2746.941 kb on - strand at 2746.941 kb on - strand at 2746.964 kb on + strand at 2746.964 kb on + strand at 2746.964 kb on + strand at 2747.062 kb on + strand, within SMc02042 at 2747.109 kb on + strand, within SMc02042 at 2747.110 kb on - strand, within SMc02042 at 2747.119 kb on + strand, within SMc02042 at 2747.120 kb on - strand, within SMc02042 at 2747.209 kb on + strand, within SMc02042 at 2747.209 kb on + strand, within SMc02042 at 2747.260 kb on + strand, within SMc02042 at 2747.260 kb on + strand, within SMc02042 at 2747.261 kb on - strand, within SMc02042 at 2747.263 kb on + strand, within SMc02042 at 2747.264 kb on - strand, within SMc02042 at 2747.350 kb on + strand, within SMc02042 at 2747.351 kb on - strand, within SMc02042 at 2747.363 kb on - strand, within SMc02042 at 2747.385 kb on + strand, within SMc02042 at 2747.444 kb on - strand, within SMc02042 at 2747.566 kb on + strand at 2748.229 kb on + strand at 2748.281 kb on + strand at 2748.282 kb on - strand at 2748.282 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 2,746,092 + +0.8 2,746,477 + SMc02041 0.42 -0.2 2,746,844 + SMc02041 0.90 -1.1 2,746,844 + SMc02041 0.90 -0.8 2,746,845 - SMc02041 0.90 +0.4 2,746,849 + -0.3 2,746,849 + -0.2 2,746,940 + +0.6 2,746,941 - -0.2 2,746,941 - -0.3 2,746,941 - -0.1 2,746,964 + +0.7 2,746,964 + -2.1 2,746,964 + -0.6 2,747,062 + SMc02042 0.17 -0.2 2,747,109 + SMc02042 0.24 +0.1 2,747,110 - SMc02042 0.24 +1.2 2,747,119 + SMc02042 0.26 -0.3 2,747,120 - SMc02042 0.26 +0.5 2,747,209 + SMc02042 0.40 -0.1 2,747,209 + SMc02042 0.40 -0.3 2,747,260 + SMc02042 0.47 -0.0 2,747,260 + SMc02042 0.47 -0.7 2,747,261 - SMc02042 0.48 +0.1 2,747,263 + SMc02042 0.48 -0.0 2,747,264 - SMc02042 0.48 -0.1 2,747,350 + SMc02042 0.61 +0.3 2,747,351 - SMc02042 0.62 +0.6 2,747,363 - SMc02042 0.63 +0.2 2,747,385 + SMc02042 0.67 -0.1 2,747,444 - SMc02042 0.76 +0.3 2,747,566 + -0.1 2,748,229 + +0.5 2,748,281 + -0.3 2,748,282 - -1.2 2,748,282 - +0.1
Or see this region's nucleotide sequence