Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01855 and SMc01854 are separated by 198 nucleotides SMc01854 and SMc01853 overlap by 4 nucleotides SMc01853 and SMc01852 are separated by 342 nucleotides
SMc01855: SMc01855 - hypothetical protein, at 2,358,575 to 2,359,114
SMc01855
SMc01854: SMc01854 - amidase (AMPD protein), at 2,359,313 to 2,360,104
SMc01854
SMc01853: SMc01853 - hypothetical protein, at 2,360,101 to 2,360,808
SMc01853
SMc01852: SMc01852 - pyrophosphate--fructose-6-phosphate 1-phosphotransferase, at 2,361,151 to 2,362,365
SMc01852
Position (kb)
2360
2361 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2359.106 kb on + strand at 2359.106 kb on + strand at 2359.116 kb on + strand at 2359.116 kb on + strand at 2359.265 kb on + strand at 2359.265 kb on + strand at 2359.265 kb on + strand at 2359.319 kb on + strand at 2360.136 kb on - strand at 2360.368 kb on + strand, within SMc01853 at 2360.369 kb on - strand, within SMc01853 at 2360.394 kb on + strand, within SMc01853 at 2360.394 kb on + strand, within SMc01853 at 2360.394 kb on + strand, within SMc01853 at 2360.556 kb on - strand, within SMc01853 at 2360.556 kb on - strand, within SMc01853 at 2360.556 kb on - strand, within SMc01853 at 2360.809 kb on - strand at 2360.809 kb on - strand at 2360.809 kb on - strand at 2360.809 kb on - strand at 2361.038 kb on - strand at 2361.038 kb on - strand at 2361.093 kb on + strand at 2361.093 kb on + strand at 2361.094 kb on - strand at 2361.256 kb on + strand at 2361.257 kb on - strand at 2361.551 kb on - strand, within SMc01852 at 2361.778 kb on + strand, within SMc01852 at 2361.779 kb on - strand, within SMc01852 at 2361.780 kb on + strand, within SMc01852 at 2361.780 kb on + strand, within SMc01852 at 2361.805 kb on + strand, within SMc01852 at 2361.806 kb on - strand, within SMc01852
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 2,359,106 + +0.2 2,359,106 + -0.1 2,359,116 + +0.8 2,359,116 + +0.0 2,359,265 + -2.8 2,359,265 + -0.1 2,359,265 + +0.5 2,359,319 + +0.1 2,360,136 - +0.9 2,360,368 + SMc01853 0.38 -3.0 2,360,369 - SMc01853 0.38 +0.2 2,360,394 + SMc01853 0.41 -4.2 2,360,394 + SMc01853 0.41 -4.8 2,360,394 + SMc01853 0.41 -4.8 2,360,556 - SMc01853 0.64 +0.1 2,360,556 - SMc01853 0.64 +0.5 2,360,556 - SMc01853 0.64 -0.5 2,360,809 - -0.8 2,360,809 - -0.3 2,360,809 - +0.6 2,360,809 - -0.3 2,361,038 - +1.3 2,361,038 - +0.6 2,361,093 + -0.9 2,361,093 + -1.7 2,361,094 - +0.5 2,361,256 + +0.7 2,361,257 - -0.5 2,361,551 - SMc01852 0.33 +1.8 2,361,778 + SMc01852 0.52 +0.5 2,361,779 - SMc01852 0.52 +0.8 2,361,780 + SMc01852 0.52 +0.4 2,361,780 + SMc01852 0.52 +0.3 2,361,805 + SMc01852 0.54 +0.1 2,361,806 - SMc01852 0.54 +0.6
Or see this region's nucleotide sequence