Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01844 and SMc01843 are separated by 541 nucleotides SMc01843 and SMc01842 are separated by 2 nucleotides
SMc01844: SMc01844 - hypothetical protein, at 2,370,399 to 2,371,343
SMc01844
SMc01843: SMc01843 - 5,10-methylenetetrahydrofolate reductase, at 2,371,885 to 2,372,826
SMc01843
SMc01842: SMc01842 - methyltransferase transcription regulator protein, at 2,372,829 to 2,373,851
SMc01842
Position (kb)
2371
2372
2373 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2370.951 kb on + strand, within SMc01844 at 2370.952 kb on - strand, within SMc01844 at 2371.131 kb on + strand, within SMc01844 at 2371.131 kb on + strand, within SMc01844 at 2371.132 kb on - strand, within SMc01844 at 2371.132 kb on - strand, within SMc01844 at 2371.132 kb on - strand, within SMc01844 at 2371.133 kb on + strand, within SMc01844 at 2371.134 kb on - strand, within SMc01844 at 2371.186 kb on + strand, within SMc01844 at 2371.326 kb on + strand at 2371.438 kb on + strand at 2371.439 kb on - strand at 2371.628 kb on + strand at 2371.629 kb on - strand at 2371.649 kb on + strand at 2371.650 kb on - strand at 2371.956 kb on - strand at 2372.065 kb on - strand, within SMc01843 at 2372.184 kb on + strand, within SMc01843 at 2372.184 kb on + strand, within SMc01843 at 2372.197 kb on + strand, within SMc01843 at 2372.198 kb on - strand, within SMc01843 at 2372.249 kb on + strand, within SMc01843 at 2372.286 kb on + strand, within SMc01843 at 2372.332 kb on + strand, within SMc01843 at 2372.332 kb on + strand, within SMc01843 at 2372.332 kb on + strand, within SMc01843 at 2372.333 kb on - strand, within SMc01843 at 2372.333 kb on - strand, within SMc01843 at 2372.333 kb on - strand, within SMc01843 at 2372.333 kb on - strand, within SMc01843 at 2372.445 kb on - strand, within SMc01843 at 2372.465 kb on + strand, within SMc01843 at 2372.675 kb on + strand, within SMc01843 at 2372.675 kb on + strand, within SMc01843 at 2372.676 kb on - strand, within SMc01843 at 2372.676 kb on - strand, within SMc01843 at 2372.768 kb on + strand at 2372.784 kb on + strand at 2372.785 kb on - strand at 2373.151 kb on + strand, within SMc01842 at 2373.152 kb on - strand, within SMc01842 at 2373.485 kb on - strand, within SMc01842 at 2373.649 kb on + strand, within SMc01842 at 2373.728 kb on + strand, within SMc01842
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 2,370,951 + SMc01844 0.58 +1.2 2,370,952 - SMc01844 0.59 -0.3 2,371,131 + SMc01844 0.77 -0.5 2,371,131 + SMc01844 0.77 +0.5 2,371,132 - SMc01844 0.78 +0.6 2,371,132 - SMc01844 0.78 -0.7 2,371,132 - SMc01844 0.78 -1.6 2,371,133 + SMc01844 0.78 -0.1 2,371,134 - SMc01844 0.78 +0.8 2,371,186 + SMc01844 0.83 +0.1 2,371,326 + +0.9 2,371,438 + +0.0 2,371,439 - +0.8 2,371,628 + -0.1 2,371,629 - +0.2 2,371,649 + -0.1 2,371,650 - +0.2 2,371,956 - -0.5 2,372,065 - SMc01843 0.19 +0.7 2,372,184 + SMc01843 0.32 -0.1 2,372,184 + SMc01843 0.32 +0.3 2,372,197 + SMc01843 0.33 +1.0 2,372,198 - SMc01843 0.33 +0.4 2,372,249 + SMc01843 0.39 -0.1 2,372,286 + SMc01843 0.43 +0.2 2,372,332 + SMc01843 0.47 +0.0 2,372,332 + SMc01843 0.47 +0.3 2,372,332 + SMc01843 0.47 +0.8 2,372,333 - SMc01843 0.48 +0.9 2,372,333 - SMc01843 0.48 -0.5 2,372,333 - SMc01843 0.48 +0.2 2,372,333 - SMc01843 0.48 -0.1 2,372,445 - SMc01843 0.59 +0.3 2,372,465 + SMc01843 0.62 -0.3 2,372,675 + SMc01843 0.84 -0.0 2,372,675 + SMc01843 0.84 +0.2 2,372,676 - SMc01843 0.84 -0.2 2,372,676 - SMc01843 0.84 +0.2 2,372,768 + +0.4 2,372,784 + +0.3 2,372,785 - +0.1 2,373,151 + SMc01842 0.31 +0.5 2,373,152 - SMc01842 0.32 -1.6 2,373,485 - SMc01842 0.64 +2.1 2,373,649 + SMc01842 0.80 -2.0 2,373,728 + SMc01842 0.88 +0.9
Or see this region's nucleotide sequence