Strain Fitness in Sinorhizobium meliloti 1021 around SMc01709
Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.0001 mg/ml |
---|---|---|---|---|---|
remove | |||||
500,405 | - | SMc01710 | 0.78 | -1.1 | |
500,405 | - | SMc01710 | 0.78 | -1.0 | |
500,470 | - | SMc01710 | 0.79 | -1.3 | |
500,590 | + | SMc01710 | 0.82 | -1.0 | |
500,591 | - | SMc01710 | 0.82 | +0.1 | |
500,591 | - | SMc01710 | 0.82 | +0.1 | |
500,632 | + | SMc01710 | 0.82 | -0.0 | |
500,672 | - | SMc01710 | 0.83 | -0.4 | |
500,672 | - | SMc01710 | 0.83 | -0.5 | |
500,702 | + | SMc01710 | 0.84 | -1.1 | |
500,702 | + | SMc01710 | 0.84 | -1.2 | |
500,703 | - | SMc01710 | 0.84 | +0.1 | |
500,750 | + | SMc01710 | 0.85 | -0.0 | |
500,750 | + | SMc01710 | 0.85 | -0.4 | |
500,750 | + | SMc01710 | 0.85 | +0.4 | |
500,750 | + | SMc01710 | 0.85 | -1.0 | |
500,750 | + | SMc01710 | 0.85 | -0.1 | |
500,751 | - | SMc01710 | 0.85 | -0.4 | |
500,751 | - | SMc01710 | 0.85 | -0.6 | |
500,840 | + | SMc01710 | 0.87 | -0.1 | |
500,840 | + | SMc01710 | 0.87 | +1.0 | |
501,112 | + | +0.9 | |||
501,113 | - | -0.2 | |||
501,285 | - | +0.3 | |||
501,285 | - | -0.1 | |||
501,536 | + | SMc01709 | 0.53 | -2.7 | |
501,537 | - | SMc01709 | 0.53 | -0.4 | |
501,627 | + | SMc01709 | 0.71 | -0.9 | |
501,628 | - | SMc01709 | 0.71 | -1.0 | |
501,743 | + | -1.0 | |||
501,743 | + | +0.5 | |||
501,771 | + | +0.2 | |||
501,772 | - | -2.2 | |||
501,838 | + | -1.4 | |||
501,838 | + | -0.5 | |||
501,839 | - | +0.5 | |||
501,839 | - | +0.6 | |||
501,839 | - | -0.4 | |||
501,848 | + | -0.1 | |||
501,849 | - | -0.7 | |||
501,849 | - | +0.1 | |||
502,214 | - | -0.1 | |||
502,259 | + | +0.4 | |||
502,259 | + | +0.1 | |||
502,259 | + | +0.2 | |||
502,259 | + | +0.7 | |||
502,259 | + | +1.5 | |||
502,259 | + | -0.8 | |||
502,260 | - | +0.1 | |||
502,260 | - | -0.8 | |||
502,324 | + | -1.0 | |||
502,325 | - | -0.2 | |||
502,353 | + | -0.0 | |||
502,353 | + | -0.2 | |||
502,401 | + | -0.4 | |||
502,495 | + | -0.1 | |||
502,496 | - | -0.8 | |||
502,496 | - | -1.4 | |||
502,496 | - | +0.9 | |||
502,542 | - | -1.6 | |||
502,658 | - | +0.8 |
Or see this region's nucleotide sequence