Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00873 and SMc00928 are separated by 290 nucleotides SMc00928 and SMc00872 are separated by 207 nucleotides SMc00872 and SMc00871 are separated by 60 nucleotides
SMc00873: SMc00873 - KUP system potassium uptake transmembrane protein, at 912,907 to 914,775
SMc00873
SMc00928: SMc00928 - signal peptide protein, at 915,066 to 916,223
SMc00928
SMc00872: SMc00872 - FOF1 ATP synthase, subunit I transmembrane protein, at 916,431 to 916,877
SMc00872
SMc00871: SMc00871 - F0F1 ATP synthase subunit A, at 916,938 to 917,690
SMc00871
Position (kb) 915
916
917 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 914.168 kb on - strand, within SMc00873 at 914.339 kb on + strand, within SMc00873 at 914.615 kb on - strand at 914.615 kb on - strand at 914.825 kb on - strand at 914.964 kb on + strand at 914.964 kb on + strand at 914.965 kb on - strand at 915.054 kb on - strand at 915.220 kb on - strand, within SMc00928 at 915.670 kb on - strand, within SMc00928 at 916.131 kb on + strand at 916.131 kb on + strand at 916.132 kb on - strand at 916.132 kb on - strand at 916.132 kb on - strand at 916.132 kb on - strand at 916.195 kb on - strand at 916.195 kb on - strand at 916.467 kb on + strand at 916.898 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 914,168 - SMc00873 0.67 -0.7 914,339 + SMc00873 0.77 +0.0 914,615 - +0.3 914,615 - -0.7 914,825 - -2.0 914,964 + -0.6 914,964 + -0.0 914,965 - -0.1 915,054 - +0.3 915,220 - SMc00928 0.13 -0.1 915,670 - SMc00928 0.52 -2.2 916,131 + -0.9 916,131 + -0.3 916,132 - -2.9 916,132 - -0.7 916,132 - -0.9 916,132 - +0.4 916,195 - -0.7 916,195 - -0.5 916,467 + +1.9 916,898 + +1.4
Or see this region's nucleotide sequence