Strain Fitness in Sinorhizobium meliloti 1021 around SMc00732

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00733 and SMc00732 are separated by 22 nucleotidesSMc00732 and SMc00731 are separated by 17 nucleotidesSMc00731 and SMc00730 are separated by 38 nucleotides SMc00733: SMc00733 - short chain dehydrogenase, at 2,847,909 to 2,848,742 SMc00733 SMc00732: SMc00732 - hypothetical protein, at 2,848,765 to 2,848,968 SMc00732 SMc00731: SMc00731 - hypothetical protein, at 2,848,986 to 2,849,564 SMc00731 SMc00730: SMc00730 - hypothetical protein, at 2,849,603 to 2,850,394 SMc00730 Position (kb) 2848 2849Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2847.854 kb on + strandat 2847.894 kb on - strandat 2847.894 kb on - strandat 2847.963 kb on + strandat 2847.963 kb on + strandat 2847.963 kb on + strandat 2847.964 kb on - strandat 2847.964 kb on - strandat 2848.074 kb on + strand, within SMc00733at 2848.075 kb on - strand, within SMc00733at 2848.075 kb on - strand, within SMc00733at 2848.075 kb on - strand, within SMc00733at 2848.351 kb on - strand, within SMc00733at 2848.351 kb on - strandat 2848.482 kb on + strand, within SMc00733at 2848.482 kb on + strand, within SMc00733at 2848.482 kb on + strand, within SMc00733at 2848.530 kb on + strand, within SMc00733at 2848.530 kb on + strand, within SMc00733at 2848.531 kb on - strand, within SMc00733at 2848.602 kb on + strand, within SMc00733at 2848.650 kb on + strand, within SMc00733at 2848.650 kb on + strand, within SMc00733at 2848.650 kb on + strand, within SMc00733at 2848.651 kb on - strand, within SMc00733at 2848.651 kb on - strand, within SMc00733at 2848.651 kb on - strand, within SMc00733at 2848.651 kb on - strand, within SMc00733at 2848.651 kb on - strand, within SMc00733at 2848.652 kb on + strand, within SMc00733at 2848.652 kb on + strand, within SMc00733at 2848.652 kb on + strand, within SMc00733at 2848.653 kb on - strand, within SMc00733at 2848.653 kb on - strand, within SMc00733at 2848.653 kb on - strand, within SMc00733at 2848.654 kb on + strand, within SMc00733at 2848.655 kb on - strand, within SMc00733at 2848.717 kb on - strandat 2848.811 kb on + strand, within SMc00732at 2848.971 kb on + strandat 2848.972 kb on - strandat 2848.972 kb on - strandat 2849.562 kb on + strandat 2849.563 kb on - strandat 2849.567 kb on + strandat 2849.610 kb on + strandat 2849.643 kb on + strandat 2849.643 kb on + strandat 2849.644 kb on - strandat 2849.644 kb on - strandat 2849.644 kb on - strandat 2849.654 kb on + strandat 2849.654 kb on + strandat 2849.654 kb on + strandat 2849.654 kb on + strandat 2849.654 kb on + strandat 2849.654 kb on + strandat 2849.654 kb on + strandat 2849.655 kb on - strandat 2849.655 kb on - strandat 2849.655 kb on - strandat 2849.655 kb on - strandat 2849.751 kb on + strand, within SMc00730at 2849.751 kb on + strand, within SMc00730at 2849.751 kb on + strand, within SMc00730at 2849.756 kb on + strandat 2849.756 kb on + strand, within SMc00730at 2849.756 kb on + strand, within SMc00730at 2849.757 kb on - strand, within SMc00730at 2849.757 kb on - strand, within SMc00730at 2849.757 kb on - strand, within SMc00730at 2849.757 kb on - strand, within SMc00730at 2849.757 kb on - strand, within SMc00730at 2849.759 kb on - strand, within SMc00730at 2849.759 kb on - strand, within SMc00730at 2849.781 kb on - strand, within SMc00730at 2849.837 kb on + strand, within SMc00730at 2849.837 kb on + strand, within SMc00730at 2849.838 kb on - strand, within SMc00730at 2849.838 kb on - strand, within SMc00730at 2849.948 kb on + strand, within SMc00730at 2849.948 kb on + strand, within SMc00730at 2849.949 kb on - strand, within SMc00730at 2849.949 kb on - strand, within SMc00730at 2849.949 kb on - strand, within SMc00730at 2849.949 kb on - strand, within SMc00730

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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2,847,854 + +0.1
2,847,894 - -0.4
2,847,894 - -0.2
2,847,963 + -0.5
2,847,963 + -0.1
2,847,963 + -0.6
2,847,964 - +0.4
2,847,964 - +0.3
2,848,074 + SMc00733 0.20 +0.2
2,848,075 - SMc00733 0.20 +1.3
2,848,075 - SMc00733 0.20 -0.1
2,848,075 - SMc00733 0.20 -0.0
2,848,351 - SMc00733 0.53 -0.4
2,848,351 - -0.5
2,848,482 + SMc00733 0.69 -0.5
2,848,482 + SMc00733 0.69 -0.2
2,848,482 + SMc00733 0.69 -0.0
2,848,530 + SMc00733 0.74 -0.3
2,848,530 + SMc00733 0.74 -0.3
2,848,531 - SMc00733 0.75 +0.2
2,848,602 + SMc00733 0.83 -1.0
2,848,650 + SMc00733 0.89 -1.1
2,848,650 + SMc00733 0.89 -0.9
2,848,650 + SMc00733 0.89 +0.2
2,848,651 - SMc00733 0.89 -0.3
2,848,651 - SMc00733 0.89 +0.6
2,848,651 - SMc00733 0.89 +0.1
2,848,651 - SMc00733 0.89 +0.5
2,848,651 - SMc00733 0.89 -0.5
2,848,652 + SMc00733 0.89 +0.2
2,848,652 + SMc00733 0.89 -0.6
2,848,652 + SMc00733 0.89 -0.5
2,848,653 - SMc00733 0.89 +0.1
2,848,653 - SMc00733 0.89 +0.6
2,848,653 - SMc00733 0.89 -0.3
2,848,654 + SMc00733 0.89 +0.5
2,848,655 - SMc00733 0.89 +0.2
2,848,717 - +0.4
2,848,811 + SMc00732 0.23 +0.4
2,848,971 + +3.0
2,848,972 - -0.1
2,848,972 - +0.3
2,849,562 + +0.5
2,849,563 - +0.8
2,849,567 + +0.2
2,849,610 + -0.5
2,849,643 + +0.6
2,849,643 + +0.0
2,849,644 - -0.8
2,849,644 - -1.3
2,849,644 - +0.0
2,849,654 + -1.4
2,849,654 + +0.8
2,849,654 + +0.8
2,849,654 + -1.4
2,849,654 + -0.1
2,849,654 + +0.7
2,849,654 + -0.0
2,849,655 - -1.2
2,849,655 - -0.7
2,849,655 - -0.6
2,849,655 - -1.9
2,849,751 + SMc00730 0.19 -0.2
2,849,751 + SMc00730 0.19 +0.1
2,849,751 + SMc00730 0.19 -0.9
2,849,756 + +1.3
2,849,756 + SMc00730 0.19 +0.1
2,849,756 + SMc00730 0.19 +1.0
2,849,757 - SMc00730 0.19 -0.0
2,849,757 - SMc00730 0.19 -0.1
2,849,757 - SMc00730 0.19 +1.5
2,849,757 - SMc00730 0.19 -1.0
2,849,757 - SMc00730 0.19 +1.2
2,849,759 - SMc00730 0.20 +0.9
2,849,759 - SMc00730 0.20 +0.3
2,849,781 - SMc00730 0.22 -0.0
2,849,837 + SMc00730 0.30 -1.1
2,849,837 + SMc00730 0.30 +1.2
2,849,838 - SMc00730 0.30 +1.3
2,849,838 - SMc00730 0.30 +0.1
2,849,948 + SMc00730 0.44 +1.2
2,849,948 + SMc00730 0.44 +0.1
2,849,949 - SMc00730 0.44 -0.2
2,849,949 - SMc00730 0.44 +0.0
2,849,949 - SMc00730 0.44 +0.6
2,849,949 - SMc00730 0.44 +1.0

Or see this region's nucleotide sequence