Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00733 and SMc00732 are separated by 22 nucleotides SMc00732 and SMc00731 are separated by 17 nucleotides SMc00731 and SMc00730 are separated by 38 nucleotides
SMc00733: SMc00733 - short chain dehydrogenase, at 2,847,909 to 2,848,742
SMc00733
SMc00732: SMc00732 - hypothetical protein, at 2,848,765 to 2,848,968
SMc00732
SMc00731: SMc00731 - hypothetical protein, at 2,848,986 to 2,849,564
SMc00731
SMc00730: SMc00730 - hypothetical protein, at 2,849,603 to 2,850,394
SMc00730
Position (kb)
2848
2849 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2847.854 kb on + strand at 2847.894 kb on - strand at 2847.894 kb on - strand at 2847.963 kb on + strand at 2847.963 kb on + strand at 2847.963 kb on + strand at 2847.964 kb on - strand at 2847.964 kb on - strand at 2848.074 kb on + strand, within SMc00733 at 2848.075 kb on - strand, within SMc00733 at 2848.075 kb on - strand, within SMc00733 at 2848.075 kb on - strand, within SMc00733 at 2848.351 kb on - strand, within SMc00733 at 2848.351 kb on - strand at 2848.482 kb on + strand, within SMc00733 at 2848.482 kb on + strand, within SMc00733 at 2848.482 kb on + strand, within SMc00733 at 2848.530 kb on + strand, within SMc00733 at 2848.530 kb on + strand, within SMc00733 at 2848.531 kb on - strand, within SMc00733 at 2848.602 kb on + strand, within SMc00733 at 2848.650 kb on + strand, within SMc00733 at 2848.650 kb on + strand, within SMc00733 at 2848.650 kb on + strand, within SMc00733 at 2848.651 kb on - strand, within SMc00733 at 2848.651 kb on - strand, within SMc00733 at 2848.651 kb on - strand, within SMc00733 at 2848.651 kb on - strand, within SMc00733 at 2848.651 kb on - strand, within SMc00733 at 2848.652 kb on + strand, within SMc00733 at 2848.652 kb on + strand, within SMc00733 at 2848.652 kb on + strand, within SMc00733 at 2848.653 kb on - strand, within SMc00733 at 2848.653 kb on - strand, within SMc00733 at 2848.653 kb on - strand, within SMc00733 at 2848.654 kb on + strand, within SMc00733 at 2848.655 kb on - strand, within SMc00733 at 2848.717 kb on - strand at 2848.811 kb on + strand, within SMc00732 at 2848.971 kb on + strand at 2848.972 kb on - strand at 2848.972 kb on - strand at 2849.562 kb on + strand at 2849.563 kb on - strand at 2849.567 kb on + strand at 2849.610 kb on + strand at 2849.643 kb on + strand at 2849.643 kb on + strand at 2849.644 kb on - strand at 2849.644 kb on - strand at 2849.644 kb on - strand at 2849.654 kb on + strand at 2849.654 kb on + strand at 2849.654 kb on + strand at 2849.654 kb on + strand at 2849.654 kb on + strand at 2849.654 kb on + strand at 2849.654 kb on + strand at 2849.655 kb on - strand at 2849.655 kb on - strand at 2849.655 kb on - strand at 2849.655 kb on - strand at 2849.751 kb on + strand, within SMc00730 at 2849.751 kb on + strand, within SMc00730 at 2849.751 kb on + strand, within SMc00730 at 2849.756 kb on + strand at 2849.756 kb on + strand, within SMc00730 at 2849.756 kb on + strand, within SMc00730 at 2849.757 kb on - strand, within SMc00730 at 2849.757 kb on - strand, within SMc00730 at 2849.757 kb on - strand, within SMc00730 at 2849.757 kb on - strand, within SMc00730 at 2849.757 kb on - strand, within SMc00730 at 2849.759 kb on - strand, within SMc00730 at 2849.759 kb on - strand, within SMc00730 at 2849.781 kb on - strand, within SMc00730 at 2849.837 kb on + strand, within SMc00730 at 2849.837 kb on + strand, within SMc00730 at 2849.838 kb on - strand, within SMc00730 at 2849.838 kb on - strand, within SMc00730 at 2849.948 kb on + strand, within SMc00730 at 2849.948 kb on + strand, within SMc00730 at 2849.949 kb on - strand, within SMc00730 at 2849.949 kb on - strand, within SMc00730 at 2849.949 kb on - strand, within SMc00730 at 2849.949 kb on - strand, within SMc00730
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 2,847,854 + +0.1 2,847,894 - -0.4 2,847,894 - -0.2 2,847,963 + -0.5 2,847,963 + -0.1 2,847,963 + -0.6 2,847,964 - +0.4 2,847,964 - +0.3 2,848,074 + SMc00733 0.20 +0.2 2,848,075 - SMc00733 0.20 +1.3 2,848,075 - SMc00733 0.20 -0.1 2,848,075 - SMc00733 0.20 -0.0 2,848,351 - SMc00733 0.53 -0.4 2,848,351 - -0.5 2,848,482 + SMc00733 0.69 -0.5 2,848,482 + SMc00733 0.69 -0.2 2,848,482 + SMc00733 0.69 -0.0 2,848,530 + SMc00733 0.74 -0.3 2,848,530 + SMc00733 0.74 -0.3 2,848,531 - SMc00733 0.75 +0.2 2,848,602 + SMc00733 0.83 -1.0 2,848,650 + SMc00733 0.89 -1.1 2,848,650 + SMc00733 0.89 -0.9 2,848,650 + SMc00733 0.89 +0.2 2,848,651 - SMc00733 0.89 -0.3 2,848,651 - SMc00733 0.89 +0.6 2,848,651 - SMc00733 0.89 +0.1 2,848,651 - SMc00733 0.89 +0.5 2,848,651 - SMc00733 0.89 -0.5 2,848,652 + SMc00733 0.89 +0.2 2,848,652 + SMc00733 0.89 -0.6 2,848,652 + SMc00733 0.89 -0.5 2,848,653 - SMc00733 0.89 +0.1 2,848,653 - SMc00733 0.89 +0.6 2,848,653 - SMc00733 0.89 -0.3 2,848,654 + SMc00733 0.89 +0.5 2,848,655 - SMc00733 0.89 +0.2 2,848,717 - +0.4 2,848,811 + SMc00732 0.23 +0.4 2,848,971 + +3.0 2,848,972 - -0.1 2,848,972 - +0.3 2,849,562 + +0.5 2,849,563 - +0.8 2,849,567 + +0.2 2,849,610 + -0.5 2,849,643 + +0.6 2,849,643 + +0.0 2,849,644 - -0.8 2,849,644 - -1.3 2,849,644 - +0.0 2,849,654 + -1.4 2,849,654 + +0.8 2,849,654 + +0.8 2,849,654 + -1.4 2,849,654 + -0.1 2,849,654 + +0.7 2,849,654 + -0.0 2,849,655 - -1.2 2,849,655 - -0.7 2,849,655 - -0.6 2,849,655 - -1.9 2,849,751 + SMc00730 0.19 -0.2 2,849,751 + SMc00730 0.19 +0.1 2,849,751 + SMc00730 0.19 -0.9 2,849,756 + +1.3 2,849,756 + SMc00730 0.19 +0.1 2,849,756 + SMc00730 0.19 +1.0 2,849,757 - SMc00730 0.19 -0.0 2,849,757 - SMc00730 0.19 -0.1 2,849,757 - SMc00730 0.19 +1.5 2,849,757 - SMc00730 0.19 -1.0 2,849,757 - SMc00730 0.19 +1.2 2,849,759 - SMc00730 0.20 +0.9 2,849,759 - SMc00730 0.20 +0.3 2,849,781 - SMc00730 0.22 -0.0 2,849,837 + SMc00730 0.30 -1.1 2,849,837 + SMc00730 0.30 +1.2 2,849,838 - SMc00730 0.30 +1.3 2,849,838 - SMc00730 0.30 +0.1 2,849,948 + SMc00730 0.44 +1.2 2,849,948 + SMc00730 0.44 +0.1 2,849,949 - SMc00730 0.44 -0.2 2,849,949 - SMc00730 0.44 +0.0 2,849,949 - SMc00730 0.44 +0.6 2,849,949 - SMc00730 0.44 +1.0
Or see this region's nucleotide sequence