Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00575 and SMc00576 are separated by 246 nucleotides SMc00576 and SMc00577 are separated by 3 nucleotides SMc00577 and SMc00578 are separated by 62 nucleotides
SMc00575: SMc00575 - hypothetical protein, at 1,244,845 to 1,246,044
SMc00575
SMc00576: SMc00576 - hypothetical protein, at 1,246,291 to 1,247,178
SMc00576
SMc00577: SMc00577 - guanylate kinase, at 1,247,182 to 1,247,841
SMc00577
SMc00578: SMc00578 - hypothetical protein, at 1,247,904 to 1,248,032
SMc00578
Position (kb)
1246
1247
1248 Strain fitness (log2 ratio)
-2
-1
0
1 at 1246.045 kb on + strand at 1246.045 kb on + strand at 1246.046 kb on - strand at 1246.046 kb on - strand at 1246.046 kb on - strand at 1246.046 kb on - strand at 1246.078 kb on - strand at 1246.079 kb on + strand at 1246.172 kb on + strand at 1246.203 kb on - strand at 1246.203 kb on - strand at 1246.263 kb on + strand at 1246.425 kb on + strand, within SMc00576 at 1246.426 kb on - strand, within SMc00576 at 1246.426 kb on - strand, within SMc00576 at 1246.611 kb on + strand, within SMc00576 at 1246.695 kb on - strand, within SMc00576 at 1246.775 kb on + strand, within SMc00576 at 1246.775 kb on + strand, within SMc00576 at 1246.776 kb on - strand, within SMc00576 at 1247.076 kb on + strand at 1248.057 kb on - strand at 1248.111 kb on - strand at 1248.111 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 1,246,045 + -0.3 1,246,045 + -0.1 1,246,046 - -0.0 1,246,046 - -0.6 1,246,046 - -0.0 1,246,046 - -0.1 1,246,078 - -0.8 1,246,079 + -0.7 1,246,172 + -0.7 1,246,203 - -1.9 1,246,203 - -1.5 1,246,263 + -0.9 1,246,425 + SMc00576 0.15 -1.3 1,246,426 - SMc00576 0.15 -0.9 1,246,426 - SMc00576 0.15 -2.3 1,246,611 + SMc00576 0.36 -0.9 1,246,695 - SMc00576 0.45 -1.1 1,246,775 + SMc00576 0.55 -0.5 1,246,775 + SMc00576 0.55 -0.5 1,246,776 - SMc00576 0.55 -0.7 1,247,076 + -1.3 1,248,057 - -0.5 1,248,111 - +0.0 1,248,111 - +0.4
Or see this region's nucleotide sequence