Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00512 and SMc00511 are separated by 62 nucleotides SMc00511 and SMc00510 overlap by 4 nucleotides SMc00510 and SMc00509 overlap by 1 nucleotides
SMc00512: SMc00512 - hypothetical protein, at 1,900,802 to 1,901,806
SMc00512
SMc00511: SMc00511 - D-ribulose-5-phosphate 3-epimerase, at 1,901,869 to 1,902,549
SMc00511
SMc00510: SMc00510 - hypothetical protein, at 1,902,546 to 1,903,283
SMc00510
SMc00509: SMc00509 - hypothetical protein, at 1,903,283 to 1,903,840
SMc00509
Position (kb)
1901
1902
1903 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1900.935 kb on + strand, within SMc00512 at 1900.936 kb on - strand, within SMc00512 at 1900.936 kb on - strand, within SMc00512 at 1901.307 kb on + strand, within SMc00512 at 1901.308 kb on - strand, within SMc00512 at 1901.308 kb on - strand, within SMc00512 at 1901.560 kb on + strand, within SMc00512 at 1901.617 kb on + strand, within SMc00512 at 1901.618 kb on - strand, within SMc00512 at 1901.749 kb on - strand at 1901.750 kb on + strand at 1901.750 kb on + strand at 1901.751 kb on - strand at 1901.751 kb on - strand at 1901.842 kb on + strand at 1901.843 kb on - strand at 1902.137 kb on + strand, within SMc00511 at 1902.138 kb on - strand, within SMc00511 at 1902.138 kb on - strand, within SMc00511 at 1902.253 kb on + strand, within SMc00511 at 1902.253 kb on + strand, within SMc00511 at 1902.253 kb on + strand, within SMc00511 at 1902.254 kb on - strand, within SMc00511 at 1902.618 kb on + strand at 1902.678 kb on + strand, within SMc00510 at 1902.678 kb on + strand, within SMc00510 at 1902.683 kb on + strand, within SMc00510 at 1902.720 kb on + strand, within SMc00510 at 1902.720 kb on + strand, within SMc00510 at 1902.720 kb on + strand, within SMc00510 at 1902.720 kb on + strand, within SMc00510 at 1902.721 kb on - strand, within SMc00510 at 1902.721 kb on - strand, within SMc00510 at 1902.852 kb on + strand, within SMc00510 at 1902.888 kb on + strand, within SMc00510 at 1902.888 kb on + strand, within SMc00510 at 1902.888 kb on + strand, within SMc00510 at 1902.889 kb on - strand, within SMc00510 at 1902.889 kb on - strand, within SMc00510 at 1902.889 kb on - strand, within SMc00510 at 1902.889 kb on - strand, within SMc00510 at 1902.889 kb on - strand, within SMc00510 at 1902.889 kb on - strand, within SMc00510 at 1902.890 kb on + strand, within SMc00510 at 1902.890 kb on + strand, within SMc00510 at 1902.890 kb on + strand, within SMc00510 at 1902.890 kb on + strand, within SMc00510 at 1902.891 kb on - strand, within SMc00510 at 1902.891 kb on - strand, within SMc00510 at 1902.933 kb on + strand, within SMc00510 at 1902.933 kb on + strand, within SMc00510 at 1902.933 kb on + strand, within SMc00510 at 1902.934 kb on - strand, within SMc00510 at 1902.934 kb on - strand, within SMc00510 at 1902.972 kb on + strand, within SMc00510 at 1902.973 kb on - strand, within SMc00510 at 1902.973 kb on - strand, within SMc00510 at 1902.973 kb on - strand, within SMc00510 at 1903.093 kb on + strand, within SMc00510 at 1903.093 kb on + strand, within SMc00510 at 1903.456 kb on + strand, within SMc00509 at 1903.457 kb on - strand, within SMc00509
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 1,900,935 + SMc00512 0.13 -0.9 1,900,936 - SMc00512 0.13 -0.1 1,900,936 - SMc00512 0.13 -0.6 1,901,307 + SMc00512 0.50 -2.6 1,901,308 - SMc00512 0.50 +0.1 1,901,308 - SMc00512 0.50 -0.2 1,901,560 + SMc00512 0.75 +0.0 1,901,617 + SMc00512 0.81 -0.9 1,901,618 - SMc00512 0.81 -0.3 1,901,749 - -1.1 1,901,750 + +0.1 1,901,750 + -0.8 1,901,751 - -0.7 1,901,751 - +0.7 1,901,842 + -0.2 1,901,843 - -1.7 1,902,137 + SMc00511 0.39 -2.5 1,902,138 - SMc00511 0.40 -4.0 1,902,138 - SMc00511 0.40 -3.1 1,902,253 + SMc00511 0.56 -2.6 1,902,253 + SMc00511 0.56 -3.7 1,902,253 + SMc00511 0.56 -2.7 1,902,254 - SMc00511 0.57 -2.3 1,902,618 + +0.1 1,902,678 + SMc00510 0.18 +0.7 1,902,678 + SMc00510 0.18 -1.3 1,902,683 + SMc00510 0.19 +0.8 1,902,720 + SMc00510 0.24 +0.3 1,902,720 + SMc00510 0.24 +0.3 1,902,720 + SMc00510 0.24 +0.2 1,902,720 + SMc00510 0.24 +0.2 1,902,721 - SMc00510 0.24 +0.7 1,902,721 - SMc00510 0.24 +0.3 1,902,852 + SMc00510 0.41 +0.7 1,902,888 + SMc00510 0.46 +0.1 1,902,888 + SMc00510 0.46 +0.7 1,902,888 + SMc00510 0.46 +0.2 1,902,889 - SMc00510 0.46 -0.2 1,902,889 - SMc00510 0.46 +0.2 1,902,889 - SMc00510 0.46 +0.1 1,902,889 - SMc00510 0.46 -0.7 1,902,889 - SMc00510 0.46 -0.7 1,902,889 - SMc00510 0.46 +0.5 1,902,890 + SMc00510 0.47 +0.5 1,902,890 + SMc00510 0.47 +0.1 1,902,890 + SMc00510 0.47 -1.9 1,902,890 + SMc00510 0.47 -0.3 1,902,891 - SMc00510 0.47 -0.2 1,902,891 - SMc00510 0.47 -0.5 1,902,933 + SMc00510 0.52 +0.3 1,902,933 + SMc00510 0.52 +1.3 1,902,933 + SMc00510 0.52 +0.4 1,902,934 - SMc00510 0.53 -1.3 1,902,934 - SMc00510 0.53 +0.5 1,902,972 + SMc00510 0.58 +0.5 1,902,973 - SMc00510 0.58 -0.1 1,902,973 - SMc00510 0.58 -0.3 1,902,973 - SMc00510 0.58 -0.1 1,903,093 + SMc00510 0.74 -0.1 1,903,093 + SMc00510 0.74 -1.6 1,903,456 + SMc00509 0.31 +0.2 1,903,457 - SMc00509 0.31 +0.3
Or see this region's nucleotide sequence