Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00429 and SMc00430 are separated by 117 nucleotides SMc00430 and SMc00431 are separated by 4 nucleotides SMc00431 and SMc00432 are separated by 76 nucleotides
SMc00429: SMc00429 - transcriptional regulator, at 377,524 to 378,333
SMc00429
SMc00430: SMc00430 - oxidoreductase, at 378,451 to 379,434
SMc00430
SMc00431: SMc00431 - hypothetical protein, at 379,439 to 379,843
SMc00431
SMc00432: SMc00432 - 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) <small>(from data)</small>, at 379,920 to 380,720
SMc00432
Position (kb) 378
379
380 Strain fitness (log2 ratio) -2
-1
0
1
2 at 377.501 kb on + strand at 377.543 kb on + strand at 377.543 kb on + strand at 377.565 kb on - strand at 377.565 kb on - strand at 377.602 kb on + strand at 377.690 kb on + strand, within SMc00429 at 377.690 kb on + strand, within SMc00429 at 377.691 kb on - strand, within SMc00429 at 377.691 kb on - strand, within SMc00429 at 377.691 kb on - strand, within SMc00429 at 377.691 kb on - strand, within SMc00429 at 377.704 kb on - strand, within SMc00429 at 377.782 kb on - strand, within SMc00429 at 377.816 kb on - strand, within SMc00429 at 378.243 kb on + strand, within SMc00429 at 378.243 kb on + strand, within SMc00429 at 378.377 kb on + strand at 378.377 kb on + strand at 378.377 kb on + strand at 378.379 kb on + strand at 378.379 kb on + strand at 378.380 kb on - strand at 378.459 kb on - strand at 378.862 kb on + strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 379.217 kb on - strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.262 kb on - strand, within SMc00430 at 379.262 kb on - strand, within SMc00430 at 379.262 kb on - strand, within SMc00430 at 379.390 kb on + strand at 379.391 kb on - strand at 379.407 kb on + strand at 379.542 kb on - strand, within SMc00431 at 379.665 kb on + strand, within SMc00431 at 379.666 kb on - strand, within SMc00431 at 379.875 kb on + strand at 379.876 kb on - strand at 379.876 kb on - strand at 380.002 kb on + strand, within SMc00432 at 380.003 kb on - strand, within SMc00432 at 380.005 kb on + strand, within SMc00432 at 380.005 kb on + strand, within SMc00432 at 380.005 kb on + strand, within SMc00432 at 380.006 kb on - strand, within SMc00432 at 380.041 kb on + strand, within SMc00432 at 380.042 kb on - strand, within SMc00432 at 380.061 kb on + strand, within SMc00432 at 380.062 kb on - strand, within SMc00432 at 380.113 kb on + strand, within SMc00432 at 380.158 kb on + strand, within SMc00432 at 380.158 kb on + strand at 380.158 kb on + strand, within SMc00432 at 380.158 kb on + strand, within SMc00432 at 380.159 kb on - strand, within SMc00432 at 380.161 kb on + strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.176 kb on + strand, within SMc00432 at 380.176 kb on + strand, within SMc00432 at 380.311 kb on + strand, within SMc00432 at 380.312 kb on - strand, within SMc00432 at 380.312 kb on - strand, within SMc00432
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 377,501 + -0.8 377,543 + -0.2 377,543 + -0.2 377,565 - -1.0 377,565 - -0.9 377,602 + +0.8 377,690 + SMc00429 0.20 -1.0 377,690 + SMc00429 0.20 +0.2 377,691 - SMc00429 0.21 +0.2 377,691 - SMc00429 0.21 +0.3 377,691 - SMc00429 0.21 +0.5 377,691 - SMc00429 0.21 -0.5 377,704 - SMc00429 0.22 -0.3 377,782 - SMc00429 0.32 -0.6 377,816 - SMc00429 0.36 -0.3 378,243 + SMc00429 0.89 -0.1 378,243 + SMc00429 0.89 +0.1 378,377 + +0.4 378,377 + +0.0 378,377 + -0.1 378,379 + +0.3 378,379 + -0.1 378,380 - +1.6 378,459 - +0.2 378,862 + SMc00430 0.42 -0.2 378,863 - SMc00430 0.42 +1.5 378,863 - SMc00430 0.42 +0.2 378,863 - SMc00430 0.42 +0.8 378,863 - SMc00430 0.42 -0.5 379,217 - SMc00430 0.78 -0.1 379,261 + SMc00430 0.82 -0.7 379,261 + SMc00430 0.82 -0.1 379,261 + SMc00430 0.82 +1.2 379,261 + SMc00430 0.82 +0.1 379,261 + SMc00430 0.82 +0.6 379,262 - SMc00430 0.82 -2.0 379,262 - SMc00430 0.82 -1.8 379,262 - SMc00430 0.82 -2.1 379,390 + +0.3 379,391 - +0.4 379,407 + -0.3 379,542 - SMc00431 0.25 -0.3 379,665 + SMc00431 0.56 -0.6 379,666 - SMc00431 0.56 +0.1 379,875 + +0.4 379,876 - +0.5 379,876 - -0.4 380,002 + SMc00432 0.10 -0.8 380,003 - SMc00432 0.10 -0.1 380,005 + SMc00432 0.11 -1.7 380,005 + SMc00432 0.11 +0.5 380,005 + SMc00432 0.11 -0.4 380,006 - SMc00432 0.11 +0.5 380,041 + SMc00432 0.15 -0.5 380,042 - SMc00432 0.15 +0.0 380,061 + SMc00432 0.18 +0.3 380,062 - SMc00432 0.18 -0.2 380,113 + SMc00432 0.24 -0.9 380,158 + SMc00432 0.30 +0.4 380,158 + +2.5 380,158 + SMc00432 0.30 -0.8 380,158 + SMc00432 0.30 -0.4 380,159 - SMc00432 0.30 +0.5 380,161 + SMc00432 0.30 +0.5 380,162 - SMc00432 0.30 +0.8 380,162 - SMc00432 0.30 +0.1 380,162 - SMc00432 0.30 -0.0 380,162 - SMc00432 0.30 +0.4 380,162 - SMc00432 0.30 +0.5 380,176 + SMc00432 0.32 +0.0 380,176 + SMc00432 0.32 -0.1 380,311 + SMc00432 0.49 +0.8 380,312 - SMc00432 0.49 -0.0 380,312 - SMc00432 0.49 -1.6
Or see this region's nucleotide sequence