Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0380 and SMa5019 are separated by 160 nucleotides SMa5019 and SMa0383 overlap by 4 nucleotides
SMa0380: SMa0380 - hydrolase, at 202,407 to 204,389
SMa0380
SMa5019: SMa5019 - hypothetical protein, at 204,550 to 204,993
SMa5019
SMa0383: SMa0383 - hypothetical protein, at 204,990 to 206,588
SMa0383
Position (kb) 204
205 Strain fitness (log2 ratio) -1
0
1 at 203.710 kb on - strand, within SMa0380 at 203.710 kb on - strand, within SMa0380 at 203.736 kb on + strand, within SMa0380 at 203.835 kb on + strand, within SMa0380 at 203.835 kb on + strand, within SMa0380 at 203.836 kb on - strand, within SMa0380 at 203.867 kb on - strand, within SMa0380 at 204.435 kb on + strand at 204.454 kb on + strand at 204.549 kb on + strand at 204.556 kb on + strand at 204.569 kb on + strand at 204.569 kb on + strand at 204.570 kb on - strand at 204.655 kb on + strand, within SMa5019 at 204.655 kb on + strand, within SMa5019 at 204.655 kb on + strand, within SMa5019 at 204.655 kb on + strand, within SMa5019 at 204.656 kb on - strand, within SMa5019 at 204.656 kb on - strand, within SMa5019 at 204.659 kb on + strand, within SMa5019 at 204.659 kb on + strand, within SMa5019 at 204.660 kb on - strand, within SMa5019 at 204.660 kb on - strand, within SMa5019 at 204.660 kb on - strand, within SMa5019 at 205.524 kb on + strand, within SMa0383 at 205.524 kb on + strand, within SMa0383 at 205.545 kb on + strand, within SMa0383 at 205.545 kb on + strand, within SMa0383 at 205.546 kb on - strand, within SMa0383 at 205.546 kb on - strand, within SMa0383 at 205.648 kb on - strand, within SMa0383 at 205.648 kb on - strand, within SMa0383 at 205.777 kb on - strand, within SMa0383
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 203,710 - SMa0380 0.66 +0.7 203,710 - SMa0380 0.66 +0.3 203,736 + SMa0380 0.67 +0.4 203,835 + SMa0380 0.72 -0.1 203,835 + SMa0380 0.72 +0.1 203,836 - SMa0380 0.72 -0.1 203,867 - SMa0380 0.74 -0.6 204,435 + +1.3 204,454 + +0.7 204,549 + +0.2 204,556 + +1.0 204,569 + +0.6 204,569 + -0.1 204,570 - -0.3 204,655 + SMa5019 0.24 +0.7 204,655 + SMa5019 0.24 -0.3 204,655 + SMa5019 0.24 +0.7 204,655 + SMa5019 0.24 +0.1 204,656 - SMa5019 0.24 +0.0 204,656 - SMa5019 0.24 -0.2 204,659 + SMa5019 0.25 +0.2 204,659 + SMa5019 0.25 +1.2 204,660 - SMa5019 0.25 +0.9 204,660 - SMa5019 0.25 +0.2 204,660 - SMa5019 0.25 +0.4 205,524 + SMa0383 0.33 +0.4 205,524 + SMa0383 0.33 -0.8 205,545 + SMa0383 0.35 +0.0 205,545 + SMa0383 0.35 +0.1 205,546 - SMa0383 0.35 -0.1 205,546 - SMa0383 0.35 +0.1 205,648 - SMa0383 0.41 -0.2 205,648 - SMa0383 0.41 +0.4 205,777 - SMa0383 0.49 -0.7
Or see this region's nucleotide sequence