Strain Fitness in Sinorhizobium meliloti 1021 around SMa2285

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2279 and SMa2281 overlap by 4 nucleotidesSMa2281 and SMa2285 are separated by 607 nucleotidesSMa2285 and SMa2287 are separated by 131 nucleotides SMa2279: SMa2279 - hypothetical protein, at 1,269,911 to 1,270,393 SMa2279 SMa2281: SMa2281 - hypothetical protein, at 1,270,390 to 1,270,722 SMa2281 SMa2285: SMa2285 - hypothetical protein, at 1,271,330 to 1,271,806 SMa2285 SMa2287: SMa2287 - LysR family transcriptional regulator, at 1,271,938 to 1,272,870 SMa2287 Position (kb) 1271 1272Strain fitness (log2 ratio) -2 -1 0 1at 1270.350 kb on - strandat 1270.406 kb on + strandat 1270.634 kb on + strand, within SMa2281at 1270.635 kb on - strand, within SMa2281at 1270.635 kb on - strand, within SMa2281at 1270.816 kb on - strandat 1270.851 kb on - strandat 1270.928 kb on - strandat 1270.928 kb on - strandat 1270.928 kb on - strandat 1270.928 kb on - strandat 1270.928 kb on - strandat 1270.952 kb on + strandat 1270.952 kb on + strandat 1270.953 kb on - strandat 1271.027 kb on + strandat 1271.124 kb on + strandat 1271.487 kb on + strand, within SMa2285at 1271.487 kb on + strand, within SMa2285at 1271.610 kb on + strand, within SMa2285at 1271.610 kb on + strand, within SMa2285at 1271.611 kb on - strand, within SMa2285at 1271.611 kb on - strand, within SMa2285at 1271.611 kb on - strand, within SMa2285at 1271.611 kb on - strand, within SMa2285at 1271.637 kb on + strand, within SMa2285at 1271.637 kb on + strand, within SMa2285at 1271.638 kb on - strand, within SMa2285at 1271.638 kb on - strand, within SMa2285at 1271.666 kb on - strand, within SMa2285at 1271.728 kb on + strand, within SMa2285at 1271.729 kb on - strand, within SMa2285at 1271.729 kb on - strand, within SMa2285at 1271.729 kb on - strand, within SMa2285at 1271.754 kb on - strand, within SMa2285at 1271.757 kb on - strand, within SMa2285at 1271.819 kb on + strandat 1271.920 kb on + strandat 1271.935 kb on - strandat 1271.935 kb on - strandat 1272.057 kb on - strand, within SMa2287at 1272.057 kb on - strand, within SMa2287at 1272.089 kb on - strand, within SMa2287at 1272.209 kb on + strand, within SMa2287at 1272.213 kb on + strand, within SMa2287at 1272.423 kb on - strand, within SMa2287at 1272.516 kb on - strand, within SMa2287

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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1,270,350 - -0.3
1,270,406 + +0.0
1,270,634 + SMa2281 0.73 -0.8
1,270,635 - SMa2281 0.74 +0.1
1,270,635 - SMa2281 0.74 +0.4
1,270,816 - -0.3
1,270,851 - +0.5
1,270,928 - -0.9
1,270,928 - +0.3
1,270,928 - -0.1
1,270,928 - -0.6
1,270,928 - -0.6
1,270,952 + -0.4
1,270,952 + -0.4
1,270,953 - -0.4
1,271,027 + -0.1
1,271,124 + +1.6
1,271,487 + SMa2285 0.33 +0.5
1,271,487 + SMa2285 0.33 -0.2
1,271,610 + SMa2285 0.59 -0.1
1,271,610 + SMa2285 0.59 +0.1
1,271,611 - SMa2285 0.59 +0.9
1,271,611 - SMa2285 0.59 +0.5
1,271,611 - SMa2285 0.59 +1.0
1,271,611 - SMa2285 0.59 +0.6
1,271,637 + SMa2285 0.64 +0.6
1,271,637 + SMa2285 0.64 -1.2
1,271,638 - SMa2285 0.65 -1.2
1,271,638 - SMa2285 0.65 +0.2
1,271,666 - SMa2285 0.70 +0.3
1,271,728 + SMa2285 0.83 +1.5
1,271,729 - SMa2285 0.84 +0.2
1,271,729 - SMa2285 0.84 -0.4
1,271,729 - SMa2285 0.84 +1.4
1,271,754 - SMa2285 0.89 +0.1
1,271,757 - SMa2285 0.90 +0.1
1,271,819 + +0.3
1,271,920 + -0.1
1,271,935 - +0.3
1,271,935 - -0.0
1,272,057 - SMa2287 0.13 +0.1
1,272,057 - SMa2287 0.13 -0.2
1,272,089 - SMa2287 0.16 +0.6
1,272,209 + SMa2287 0.29 -0.2
1,272,213 + SMa2287 0.29 -0.2
1,272,423 - SMa2287 0.52 -2.2
1,272,516 - SMa2287 0.62 -0.9

Or see this region's nucleotide sequence