Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2279 and SMa2281 overlap by 4 nucleotides SMa2281 and SMa2285 are separated by 607 nucleotides SMa2285 and SMa2287 are separated by 131 nucleotides
SMa2279: SMa2279 - hypothetical protein, at 1,269,911 to 1,270,393
SMa2279
SMa2281: SMa2281 - hypothetical protein, at 1,270,390 to 1,270,722
SMa2281
SMa2285: SMa2285 - hypothetical protein, at 1,271,330 to 1,271,806
SMa2285
SMa2287: SMa2287 - LysR family transcriptional regulator, at 1,271,938 to 1,272,870
SMa2287
Position (kb)
1271
1272 Strain fitness (log2 ratio)
-2
-1
0
1 at 1270.350 kb on - strand at 1270.406 kb on + strand at 1270.634 kb on + strand, within SMa2281 at 1270.635 kb on - strand, within SMa2281 at 1270.635 kb on - strand, within SMa2281 at 1270.816 kb on - strand at 1270.851 kb on - strand at 1270.928 kb on - strand at 1270.928 kb on - strand at 1270.928 kb on - strand at 1270.928 kb on - strand at 1270.928 kb on - strand at 1270.952 kb on + strand at 1270.952 kb on + strand at 1270.953 kb on - strand at 1271.027 kb on + strand at 1271.124 kb on + strand at 1271.487 kb on + strand, within SMa2285 at 1271.487 kb on + strand, within SMa2285 at 1271.610 kb on + strand, within SMa2285 at 1271.610 kb on + strand, within SMa2285 at 1271.611 kb on - strand, within SMa2285 at 1271.611 kb on - strand, within SMa2285 at 1271.611 kb on - strand, within SMa2285 at 1271.611 kb on - strand, within SMa2285 at 1271.637 kb on + strand, within SMa2285 at 1271.637 kb on + strand, within SMa2285 at 1271.638 kb on - strand, within SMa2285 at 1271.638 kb on - strand, within SMa2285 at 1271.666 kb on - strand, within SMa2285 at 1271.728 kb on + strand, within SMa2285 at 1271.729 kb on - strand, within SMa2285 at 1271.729 kb on - strand, within SMa2285 at 1271.729 kb on - strand, within SMa2285 at 1271.754 kb on - strand, within SMa2285 at 1271.757 kb on - strand, within SMa2285 at 1271.819 kb on + strand at 1271.920 kb on + strand at 1271.935 kb on - strand at 1271.935 kb on - strand at 1272.057 kb on - strand, within SMa2287 at 1272.057 kb on - strand, within SMa2287 at 1272.089 kb on - strand, within SMa2287 at 1272.209 kb on + strand, within SMa2287 at 1272.213 kb on + strand, within SMa2287 at 1272.423 kb on - strand, within SMa2287 at 1272.516 kb on - strand, within SMa2287
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 1,270,350 - -0.3 1,270,406 + +0.0 1,270,634 + SMa2281 0.73 -0.8 1,270,635 - SMa2281 0.74 +0.1 1,270,635 - SMa2281 0.74 +0.4 1,270,816 - -0.3 1,270,851 - +0.5 1,270,928 - -0.9 1,270,928 - +0.3 1,270,928 - -0.1 1,270,928 - -0.6 1,270,928 - -0.6 1,270,952 + -0.4 1,270,952 + -0.4 1,270,953 - -0.4 1,271,027 + -0.1 1,271,124 + +1.6 1,271,487 + SMa2285 0.33 +0.5 1,271,487 + SMa2285 0.33 -0.2 1,271,610 + SMa2285 0.59 -0.1 1,271,610 + SMa2285 0.59 +0.1 1,271,611 - SMa2285 0.59 +0.9 1,271,611 - SMa2285 0.59 +0.5 1,271,611 - SMa2285 0.59 +1.0 1,271,611 - SMa2285 0.59 +0.6 1,271,637 + SMa2285 0.64 +0.6 1,271,637 + SMa2285 0.64 -1.2 1,271,638 - SMa2285 0.65 -1.2 1,271,638 - SMa2285 0.65 +0.2 1,271,666 - SMa2285 0.70 +0.3 1,271,728 + SMa2285 0.83 +1.5 1,271,729 - SMa2285 0.84 +0.2 1,271,729 - SMa2285 0.84 -0.4 1,271,729 - SMa2285 0.84 +1.4 1,271,754 - SMa2285 0.89 +0.1 1,271,757 - SMa2285 0.90 +0.1 1,271,819 + +0.3 1,271,920 + -0.1 1,271,935 - +0.3 1,271,935 - -0.0 1,272,057 - SMa2287 0.13 +0.1 1,272,057 - SMa2287 0.13 -0.2 1,272,089 - SMa2287 0.16 +0.6 1,272,209 + SMa2287 0.29 -0.2 1,272,213 + SMa2287 0.29 -0.2 1,272,423 - SMa2287 0.52 -2.2 1,272,516 - SMa2287 0.62 -0.9
Or see this region's nucleotide sequence