Strain Fitness in Sinorhizobium meliloti 1021 around SMa1700
Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.0001 mg/ml |
---|---|---|---|---|---|
remove | |||||
958,118 | + | SMa1698 | 0.42 | +0.1 | |
958,132 | + | SMa1698 | 0.45 | -0.1 | |
958,133 | - | SMa1698 | 0.45 | -0.5 | |
958,149 | + | SMa1698 | 0.48 | -0.1 | |
958,365 | + | +0.5 | |||
958,368 | + | +0.5 | |||
958,400 | + | -1.1 | |||
958,401 | - | -0.3 | |||
958,556 | - | +0.6 | |||
958,583 | + | +0.8 | |||
958,583 | + | -0.6 | |||
958,583 | + | -0.4 | |||
958,680 | - | +0.3 | |||
958,695 | - | -0.3 | |||
958,697 | - | -0.0 | |||
958,719 | + | -0.8 | |||
958,720 | - | -0.9 | |||
958,795 | + | +0.3 | |||
958,795 | + | +1.8 | |||
958,796 | - | +0.1 | |||
958,796 | - | -0.3 | |||
958,876 | - | +0.2 | |||
959,113 | + | SMa1700 | 0.73 | +0.6 | |
959,114 | - | SMa1700 | 0.73 | +1.1 | |
959,205 | - | +0.2 | |||
959,299 | + | -1.1 | |||
959,299 | + | +0.5 | |||
959,299 | + | +0.2 | |||
959,473 | + | SMa1702 | 0.26 | -0.0 | |
959,474 | - | SMa1702 | 0.27 | +0.3 | |
959,673 | + | SMa1702 | 0.60 | -0.2 | |
959,674 | - | SMa1702 | 0.60 | -0.1 | |
959,801 | + | SMa1702 | 0.82 | -1.7 | |
959,802 | - | SMa1702 | 0.82 | +0.4 | |
960,003 | - | -1.5 | |||
960,068 | - | +0.4 | |||
960,068 | - | -0.4 | |||
960,070 | + | -0.0 | |||
960,071 | - | +0.1 | |||
960,157 | - | -0.9 |
Or see this region's nucleotide sequence