Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1485 and SMa1487 are separated by 228 nucleotides SMa1487 and SMa1488 overlap by 4 nucleotides SMa1488 and SMa1491 overlap by 4 nucleotides SMa1491 and SMa1493 are separated by 159 nucleotides
SMa1485: SMa1485 - Permease, MFS, at 817,966 to 819,255
SMa1485
SMa1487: SMa1487 - cytochrome C, at 819,484 to 819,852
SMa1487
SMa1488: SMa1488 - oxidoreductase, at 819,849 to 822,092
SMa1488
SMa1491: SMa1491 - Oxidoreductase, at 822,089 to 822,553
SMa1491
SMa1493: SMa1493 - LysR family transcriptional regulator, at 822,713 to 823,636
SMa1493
Position (kb) 819
820
821
822
823 Strain fitness (log2 ratio) -2
-1
0
1 at 818.940 kb on - strand, within SMa1485 at 819.108 kb on + strand, within SMa1485 at 819.109 kb on - strand, within SMa1485 at 819.255 kb on + strand at 819.255 kb on + strand at 819.255 kb on + strand at 819.256 kb on - strand at 819.256 kb on - strand at 819.268 kb on + strand at 819.270 kb on + strand at 819.270 kb on + strand at 819.271 kb on - strand at 819.309 kb on + strand at 819.309 kb on + strand at 819.309 kb on + strand at 819.309 kb on + strand at 819.310 kb on - strand at 819.341 kb on + strand at 819.372 kb on - strand at 819.372 kb on - strand at 819.372 kb on - strand at 819.424 kb on - strand at 819.424 kb on - strand at 819.485 kb on + strand at 819.485 kb on + strand at 819.485 kb on + strand at 819.495 kb on + strand at 819.630 kb on + strand, within SMa1487 at 819.631 kb on - strand, within SMa1487 at 819.631 kb on - strand, within SMa1487 at 819.644 kb on + strand, within SMa1487 at 819.644 kb on + strand, within SMa1487 at 819.645 kb on - strand, within SMa1487 at 820.054 kb on + strand at 820.084 kb on + strand, within SMa1488 at 820.084 kb on + strand, within SMa1488 at 820.085 kb on - strand, within SMa1488 at 820.559 kb on - strand, within SMa1488 at 820.592 kb on + strand, within SMa1488 at 820.592 kb on + strand, within SMa1488 at 820.592 kb on + strand, within SMa1488 at 820.592 kb on + strand, within SMa1488 at 820.593 kb on - strand, within SMa1488 at 820.593 kb on - strand, within SMa1488 at 820.829 kb on - strand, within SMa1488 at 821.035 kb on + strand, within SMa1488 at 821.036 kb on - strand, within SMa1488 at 821.036 kb on - strand, within SMa1488 at 821.099 kb on - strand, within SMa1488 at 821.411 kb on - strand, within SMa1488 at 821.675 kb on + strand, within SMa1488 at 821.689 kb on + strand, within SMa1488 at 821.689 kb on + strand, within SMa1488 at 821.690 kb on - strand, within SMa1488 at 821.690 kb on - strand, within SMa1488 at 821.690 kb on - strand, within SMa1488 at 821.746 kb on + strand, within SMa1488 at 821.746 kb on + strand, within SMa1488 at 821.835 kb on + strand, within SMa1488 at 821.835 kb on + strand, within SMa1488 at 821.836 kb on - strand, within SMa1488 at 821.836 kb on - strand, within SMa1488 at 822.071 kb on + strand at 822.072 kb on - strand at 822.072 kb on - strand at 822.148 kb on + strand, within SMa1491 at 822.149 kb on - strand, within SMa1491 at 822.149 kb on - strand, within SMa1491 at 822.149 kb on - strand, within SMa1491 at 822.149 kb on - strand, within SMa1491 at 822.149 kb on - strand, within SMa1491 at 822.149 kb on - strand, within SMa1491 at 822.150 kb on + strand, within SMa1491 at 822.150 kb on + strand, within SMa1491 at 822.150 kb on + strand, within SMa1491 at 822.151 kb on - strand, within SMa1491 at 822.221 kb on + strand, within SMa1491 at 822.221 kb on + strand, within SMa1491 at 822.221 kb on + strand, within SMa1491 at 822.222 kb on - strand, within SMa1491 at 822.302 kb on + strand, within SMa1491 at 822.450 kb on + strand, within SMa1491 at 822.450 kb on + strand, within SMa1491 at 822.451 kb on - strand, within SMa1491 at 822.529 kb on + strand at 822.529 kb on + strand at 822.637 kb on + strand at 822.668 kb on - strand at 822.708 kb on - strand at 822.708 kb on - strand at 822.712 kb on + strand at 822.712 kb on + strand at 822.712 kb on + strand at 822.713 kb on - strand at 822.802 kb on - strand at 822.945 kb on + strand, within SMa1493 at 822.946 kb on - strand, within SMa1493 at 822.946 kb on - strand, within SMa1493 at 822.967 kb on + strand, within SMa1493 at 823.071 kb on - strand, within SMa1493
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 818,940 - SMa1485 0.76 -1.8 819,108 + SMa1485 0.89 +0.0 819,109 - SMa1485 0.89 +0.1 819,255 + +0.3 819,255 + -0.2 819,255 + -0.2 819,256 - -0.2 819,256 - -0.4 819,268 + -0.6 819,270 + -0.7 819,270 + -1.4 819,271 - +0.5 819,309 + +0.6 819,309 + -0.5 819,309 + -1.0 819,309 + +0.7 819,310 - +0.0 819,341 + -0.1 819,372 - +0.2 819,372 - -0.2 819,372 - -0.6 819,424 - +0.3 819,424 - +0.0 819,485 + -0.2 819,485 + +0.7 819,485 + +0.2 819,495 + +0.5 819,630 + SMa1487 0.40 +0.0 819,631 - SMa1487 0.40 -0.5 819,631 - SMa1487 0.40 -0.4 819,644 + SMa1487 0.43 -0.2 819,644 + SMa1487 0.43 -0.6 819,645 - SMa1487 0.44 +0.8 820,054 + +0.8 820,084 + SMa1488 0.10 -1.1 820,084 + SMa1488 0.10 +0.0 820,085 - SMa1488 0.11 -0.2 820,559 - SMa1488 0.32 +0.5 820,592 + SMa1488 0.33 +1.3 820,592 + SMa1488 0.33 -1.5 820,592 + SMa1488 0.33 +0.2 820,592 + SMa1488 0.33 +1.0 820,593 - SMa1488 0.33 +0.4 820,593 - SMa1488 0.33 -0.2 820,829 - SMa1488 0.44 +1.7 821,035 + SMa1488 0.53 -0.2 821,036 - SMa1488 0.53 -0.7 821,036 - SMa1488 0.53 +0.7 821,099 - SMa1488 0.56 -0.1 821,411 - SMa1488 0.70 +0.3 821,675 + SMa1488 0.81 +0.9 821,689 + SMa1488 0.82 +0.4 821,689 + SMa1488 0.82 +0.2 821,690 - SMa1488 0.82 +0.9 821,690 - SMa1488 0.82 +0.4 821,690 - SMa1488 0.82 -0.1 821,746 + SMa1488 0.85 -0.2 821,746 + SMa1488 0.85 +0.4 821,835 + SMa1488 0.89 +0.0 821,835 + SMa1488 0.89 -0.3 821,836 - SMa1488 0.89 +0.3 821,836 - SMa1488 0.89 +0.3 822,071 + -0.8 822,072 - -0.6 822,072 - -0.3 822,148 + SMa1491 0.13 -0.2 822,149 - SMa1491 0.13 -0.3 822,149 - SMa1491 0.13 -0.2 822,149 - SMa1491 0.13 -0.5 822,149 - SMa1491 0.13 +0.4 822,149 - SMa1491 0.13 -0.2 822,149 - SMa1491 0.13 +0.3 822,150 + SMa1491 0.13 +1.0 822,150 + SMa1491 0.13 +0.5 822,150 + SMa1491 0.13 +0.2 822,151 - SMa1491 0.13 -0.1 822,221 + SMa1491 0.28 -0.1 822,221 + SMa1491 0.28 +0.3 822,221 + SMa1491 0.28 +0.9 822,222 - SMa1491 0.29 -0.6 822,302 + SMa1491 0.46 -0.3 822,450 + SMa1491 0.78 +0.4 822,450 + SMa1491 0.78 -0.9 822,451 - SMa1491 0.78 -0.1 822,529 + -0.4 822,529 + +0.3 822,637 + +0.2 822,668 - -0.1 822,708 - +0.1 822,708 - +0.4 822,712 + +0.1 822,712 + -0.0 822,712 + -0.1 822,713 - +0.2 822,802 - -0.6 822,945 + SMa1493 0.25 +0.7 822,946 - SMa1493 0.25 +1.0 822,946 - SMa1493 0.25 -0.1 822,967 + SMa1493 0.27 +1.4 823,071 - SMa1493 0.39 -0.9
Or see this region's nucleotide sequence