Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1414 and SMa1415 overlap by 1 nucleotides SMa1415 and SMa1417 are separated by 162 nucleotides
SMa1414: SMa1414 - Dehydrogenase, FAD-dependent, at 777,621 to 779,216
SMa1414
SMa1415: SMa1415 - aldehyde dehydrogenase, at 779,216 to 780,712
SMa1415
SMa1417: SMa1417 - Dehydrogenase, Zn-dependent, at 780,875 to 781,900
SMa1417
Position (kb) 779
780
781 Strain fitness (log2 ratio) -2
-1
0
1 at 778.285 kb on + strand, within SMa1414 at 778.285 kb on + strand, within SMa1414 at 778.285 kb on + strand, within SMa1414 at 778.371 kb on - strand, within SMa1414 at 778.371 kb on - strand, within SMa1414 at 778.442 kb on + strand, within SMa1414 at 778.520 kb on - strand, within SMa1414 at 778.618 kb on + strand, within SMa1414 at 778.619 kb on - strand, within SMa1414 at 778.666 kb on + strand, within SMa1414 at 778.710 kb on - strand, within SMa1414 at 778.829 kb on + strand, within SMa1414 at 778.829 kb on + strand, within SMa1414 at 778.829 kb on + strand, within SMa1414 at 778.830 kb on - strand, within SMa1414 at 778.852 kb on + strand, within SMa1414 at 778.853 kb on - strand, within SMa1414 at 778.909 kb on + strand, within SMa1414 at 778.910 kb on - strand, within SMa1414 at 778.931 kb on + strand, within SMa1414 at 778.931 kb on + strand, within SMa1414 at 778.933 kb on + strand, within SMa1414 at 779.259 kb on + strand at 779.272 kb on + strand at 779.272 kb on + strand at 779.273 kb on - strand at 779.273 kb on - strand at 779.275 kb on - strand at 779.275 kb on - strand at 779.275 kb on - strand at 779.290 kb on - strand at 779.365 kb on + strand at 779.365 kb on + strand at 779.366 kb on - strand, within SMa1415 at 779.423 kb on - strand, within SMa1415 at 779.590 kb on - strand, within SMa1415 at 779.590 kb on - strand, within SMa1415 at 779.662 kb on + strand, within SMa1415 at 779.662 kb on + strand, within SMa1415 at 779.665 kb on - strand, within SMa1415 at 779.665 kb on - strand, within SMa1415 at 779.665 kb on - strand, within SMa1415 at 780.076 kb on + strand, within SMa1415 at 780.076 kb on + strand, within SMa1415 at 780.077 kb on - strand, within SMa1415 at 780.078 kb on + strand, within SMa1415 at 780.079 kb on - strand, within SMa1415 at 780.212 kb on - strand, within SMa1415 at 780.341 kb on + strand, within SMa1415 at 780.730 kb on + strand at 780.877 kb on - strand at 780.961 kb on - strand at 781.077 kb on - strand, within SMa1417 at 781.088 kb on + strand, within SMa1417 at 781.121 kb on - strand, within SMa1417 at 781.271 kb on + strand, within SMa1417 at 781.515 kb on - strand, within SMa1417 at 781.515 kb on - strand, within SMa1417 at 781.542 kb on + strand, within SMa1417 at 781.542 kb on + strand, within SMa1417 at 781.543 kb on - strand, within SMa1417
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 778,285 + SMa1414 0.42 +0.0 778,285 + SMa1414 0.42 -0.8 778,285 + SMa1414 0.42 -0.6 778,371 - SMa1414 0.47 +0.1 778,371 - SMa1414 0.47 -1.1 778,442 + SMa1414 0.51 -0.3 778,520 - SMa1414 0.56 +0.1 778,618 + SMa1414 0.62 +0.0 778,619 - SMa1414 0.63 +0.2 778,666 + SMa1414 0.65 -0.9 778,710 - SMa1414 0.68 -0.1 778,829 + SMa1414 0.76 -0.3 778,829 + SMa1414 0.76 -0.3 778,829 + SMa1414 0.76 +0.3 778,830 - SMa1414 0.76 -0.1 778,852 + SMa1414 0.77 +0.3 778,853 - SMa1414 0.77 +0.1 778,909 + SMa1414 0.81 -0.3 778,910 - SMa1414 0.81 -0.4 778,931 + SMa1414 0.82 +0.2 778,931 + SMa1414 0.82 +0.7 778,933 + SMa1414 0.82 -0.0 779,259 + -0.1 779,272 + +0.3 779,272 + -0.7 779,273 - -0.8 779,273 - +0.7 779,275 - +0.6 779,275 - +0.1 779,275 - +0.4 779,290 - -0.0 779,365 + -0.2 779,365 + -0.6 779,366 - SMa1415 0.10 -0.1 779,423 - SMa1415 0.14 -0.0 779,590 - SMa1415 0.25 +0.0 779,590 - SMa1415 0.25 +0.1 779,662 + SMa1415 0.30 +0.9 779,662 + SMa1415 0.30 -0.1 779,665 - SMa1415 0.30 -0.6 779,665 - SMa1415 0.30 +0.6 779,665 - SMa1415 0.30 +0.8 780,076 + SMa1415 0.57 -0.1 780,076 + SMa1415 0.57 +0.4 780,077 - SMa1415 0.58 +0.5 780,078 + SMa1415 0.58 +0.2 780,079 - SMa1415 0.58 -0.7 780,212 - SMa1415 0.67 +1.3 780,341 + SMa1415 0.75 +0.3 780,730 + +0.3 780,877 - +0.0 780,961 - +0.6 781,077 - SMa1417 0.20 +0.2 781,088 + SMa1417 0.21 -0.2 781,121 - SMa1417 0.24 +0.2 781,271 + SMa1417 0.39 +0.1 781,515 - SMa1417 0.62 -2.3 781,515 - SMa1417 0.62 -1.0 781,542 + SMa1417 0.65 +0.4 781,542 + SMa1417 0.65 -0.0 781,543 - SMa1417 0.65 +0.4
Or see this region's nucleotide sequence