Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1168 and SMa1169 are separated by 83 nucleotides SMa1169 and SMa1170 are separated by 61 nucleotides SMa1170 and SMa1171 are separated by 2 nucleotides SMa1171 and SMa1172 overlap by 4 nucleotides SMa1172 and SMa1174 overlap by 80 nucleotides
SMa1168: SMa1168 - Dehydrogenase, FAD-dependent, at 640,997 to 641,578
SMa1168
SMa1169: SMa1169 - hypothetical protein, at 641,662 to 642,003
SMa1169
SMa1170: SMa1170 - hypothetical protein, at 642,065 to 642,382
SMa1170
SMa1171: SMa1171 - hypothetical protein, at 642,385 to 642,645
SMa1171
SMa1172: SMa1172 - hypothetical protein, at 642,642 to 642,890
SMa1172
SMa1174: SMa1174 - hypothetical protein, at 642,811 to 643,314
SMa1174
Position (kb) 642
643 Strain fitness (log2 ratio) -1
0
1 at 641.075 kb on + strand, within SMa1168 at 641.119 kb on - strand, within SMa1168 at 641.324 kb on + strand, within SMa1168 at 641.324 kb on + strand, within SMa1168 at 641.559 kb on - strand at 641.875 kb on + strand, within SMa1169 at 641.875 kb on + strand, within SMa1169 at 641.875 kb on + strand, within SMa1169 at 641.875 kb on + strand, within SMa1169 at 641.875 kb on + strand, within SMa1169 at 641.928 kb on - strand, within SMa1169 at 642.008 kb on + strand at 642.050 kb on + strand at 642.075 kb on + strand at 642.075 kb on + strand at 642.181 kb on + strand, within SMa1170 at 642.226 kb on + strand, within SMa1170 at 642.327 kb on + strand, within SMa1170 at 642.365 kb on + strand at 642.369 kb on + strand at 642.369 kb on + strand at 642.370 kb on - strand at 642.370 kb on - strand at 642.381 kb on - strand at 642.381 kb on - strand at 642.386 kb on + strand at 642.464 kb on + strand, within SMa1171 at 642.465 kb on - strand, within SMa1171 at 642.465 kb on - strand, within SMa1171 at 642.471 kb on - strand, within SMa1171 at 642.914 kb on - strand, within SMa1174 at 643.192 kb on - strand, within SMa1174 at 643.259 kb on - strand, within SMa1174 at 643.372 kb on + strand at 643.373 kb on - strand at 643.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 641,075 + SMa1168 0.13 +0.2 641,119 - SMa1168 0.21 -1.1 641,324 + SMa1168 0.56 -0.4 641,324 + SMa1168 0.56 -0.6 641,559 - +0.3 641,875 + SMa1169 0.62 -1.0 641,875 + SMa1169 0.62 -0.2 641,875 + SMa1169 0.62 -0.1 641,875 + SMa1169 0.62 -0.0 641,875 + SMa1169 0.62 +0.4 641,928 - SMa1169 0.78 +0.7 642,008 + +0.0 642,050 + -0.1 642,075 + +0.1 642,075 + +0.2 642,181 + SMa1170 0.36 +0.2 642,226 + SMa1170 0.51 +1.4 642,327 + SMa1170 0.82 +0.4 642,365 + +0.8 642,369 + -1.7 642,369 + -0.1 642,370 - +0.6 642,370 - -0.1 642,381 - +0.1 642,381 - +0.1 642,386 + -0.2 642,464 + SMa1171 0.30 -1.0 642,465 - SMa1171 0.31 -1.2 642,465 - SMa1171 0.31 +0.8 642,471 - SMa1171 0.33 +0.2 642,914 - SMa1174 0.20 -1.4 643,192 - SMa1174 0.76 +0.1 643,259 - SMa1174 0.89 -0.9 643,372 + -0.6 643,373 - +0.3 643,373 - +0.5
Or see this region's nucleotide sequence