Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1115 and SMa1118 are separated by 792 nucleotides SMa1118 and SMa1120 are separated by 56 nucleotides SMa1120 and SMa1122 are separated by 6 nucleotides
SMa1115: SMa1115 - Mn2+/Fe2+ transporter NRAMP family, at 606,562 to 607,890
SMa1115
SMa1118: SMa1118 - HspC2 heat shock protein, at 608,683 to 609,210
SMa1118
SMa1120: SMa1120 - ABC transporter ATP-binding protein, at 609,267 to 610,181
SMa1120
SMa1122: SMa1122 - permease, at 610,188 to 612,551
SMa1122
Position (kb) 608
609
610 Strain fitness (log2 ratio) -1
0
1 at 607.699 kb on - strand, within SMa1115 at 607.699 kb on - strand, within SMa1115 at 607.889 kb on - strand at 608.059 kb on + strand at 608.268 kb on + strand at 608.269 kb on - strand at 608.299 kb on + strand at 608.300 kb on - strand at 608.300 kb on - strand at 608.302 kb on + strand at 608.372 kb on + strand at 608.372 kb on + strand at 608.373 kb on - strand at 608.384 kb on + strand at 608.394 kb on - strand at 608.498 kb on - strand at 608.552 kb on + strand at 608.553 kb on - strand at 608.595 kb on - strand at 608.657 kb on + strand at 608.917 kb on + strand, within SMa1118 at 609.037 kb on + strand, within SMa1118 at 609.282 kb on - strand at 609.304 kb on + strand at 609.461 kb on - strand, within SMa1120 at 609.615 kb on - strand, within SMa1120 at 609.632 kb on + strand, within SMa1120 at 609.650 kb on + strand, within SMa1120 at 610.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 607,699 - SMa1115 0.86 +0.8 607,699 - SMa1115 0.86 +0.3 607,889 - -0.5 608,059 + +0.0 608,268 + -0.1 608,269 - -0.1 608,299 + -0.8 608,300 - +0.5 608,300 - -0.1 608,302 + +0.3 608,372 + +0.0 608,372 + +0.3 608,373 - +0.1 608,384 + -0.6 608,394 - -0.3 608,498 - +0.2 608,552 + -0.0 608,553 - +1.6 608,595 - -0.8 608,657 + -0.3 608,917 + SMa1118 0.44 -1.5 609,037 + SMa1118 0.67 -1.1 609,282 - +0.9 609,304 + +0.5 609,461 - SMa1120 0.21 -0.2 609,615 - SMa1120 0.38 -0.3 609,632 + SMa1120 0.40 +0.3 609,650 + SMa1120 0.42 +0.1 610,108 - +0.6
Or see this region's nucleotide sequence