Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1050 and SMa1052 overlap by 4 nucleotides SMa1052 and SMa1053 overlap by 4 nucleotides SMa1053 and SMa1056 overlap by 4 nucleotides SMa1056 and SMa1057 overlap by 10 nucleotides
SMa1050: SMa1050 - hypothetical protein, at 576,097 to 576,642
SMa1050
SMa1052: SMa1052 - hypothetical protein, at 576,639 to 577,070
SMa1052
SMa1053: SMa1053 - hypothetical protein, at 577,067 to 577,477
SMa1053
SMa1056: SMa1056 - transcriptional regulator, at 577,474 to 577,821
SMa1056
SMa1057: SMa1057 - hypothetical protein, at 577,812 to 579,110
SMa1057
Position (kb) 576
577
578 Strain fitness (log2 ratio) -1
0
1
2 at 575.679 kb on + strand at 575.679 kb on + strand at 575.775 kb on - strand at 575.807 kb on - strand at 576.027 kb on + strand at 576.028 kb on - strand at 576.188 kb on + strand, within SMa1050 at 576.207 kb on + strand, within SMa1050 at 576.243 kb on - strand, within SMa1050 at 576.265 kb on + strand, within SMa1050 at 576.265 kb on + strand, within SMa1050 at 576.266 kb on - strand, within SMa1050 at 576.266 kb on - strand, within SMa1050 at 576.335 kb on - strand, within SMa1050 at 576.398 kb on - strand, within SMa1050 at 576.537 kb on - strand, within SMa1050 at 576.702 kb on + strand, within SMa1052 at 577.317 kb on - strand, within SMa1053 at 577.387 kb on + strand, within SMa1053 at 577.636 kb on + strand, within SMa1056 at 577.637 kb on - strand, within SMa1056 at 577.833 kb on + strand at 577.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 575,679 + +0.0 575,679 + -0.8 575,775 - +0.7 575,807 - -0.2 576,027 + -0.1 576,028 - +0.4 576,188 + SMa1050 0.17 -0.3 576,207 + SMa1050 0.20 -0.3 576,243 - SMa1050 0.27 +0.6 576,265 + SMa1050 0.31 +0.5 576,265 + SMa1050 0.31 -0.1 576,266 - SMa1050 0.31 +0.4 576,266 - SMa1050 0.31 +0.5 576,335 - SMa1050 0.44 +0.4 576,398 - SMa1050 0.55 -0.5 576,537 - SMa1050 0.81 -0.4 576,702 + SMa1052 0.15 -1.6 577,317 - SMa1053 0.61 +0.1 577,387 + SMa1053 0.78 -1.1 577,636 + SMa1056 0.47 +1.8 577,637 - SMa1056 0.47 -0.0 577,833 + -0.2 577,834 - -0.6
Or see this region's nucleotide sequence