Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0951 and SMa0952 overlap by 11 nucleotides SMa0952 and SMa0953 overlap by 4 nucleotides SMa0953 and SMa0955 are separated by 273 nucleotides
SMa0951: SMa0951 - ABC transporter permease, at 530,886 to 531,749
SMa0951
SMa0952: SMa0952 - ABC transporter permease, at 531,739 to 532,629
SMa0952
SMa0953: SMa0953 - ABC transporter ATP-binding protein, at 532,626 to 533,744
SMa0953
SMa0955: SMa0955 - GntR family transcriptional regulator, at 534,018 to 534,710
SMa0955
Position (kb) 532
533
534 Strain fitness (log2 ratio) -2
-1
0
1 at 531.698 kb on + strand at 531.743 kb on + strand at 531.744 kb on - strand at 531.932 kb on + strand, within SMa0952 at 531.932 kb on + strand, within SMa0952 at 531.932 kb on + strand, within SMa0952 at 531.932 kb on + strand, within SMa0952 at 531.933 kb on - strand, within SMa0952 at 532.058 kb on + strand, within SMa0952 at 532.090 kb on + strand, within SMa0952 at 532.154 kb on + strand, within SMa0952 at 532.155 kb on - strand, within SMa0952 at 532.244 kb on + strand, within SMa0952 at 532.355 kb on - strand, within SMa0952 at 532.355 kb on - strand, within SMa0952 at 532.750 kb on - strand, within SMa0953 at 532.750 kb on - strand, within SMa0953 at 532.786 kb on + strand, within SMa0953 at 532.786 kb on + strand, within SMa0953 at 532.786 kb on + strand, within SMa0953 at 532.787 kb on - strand, within SMa0953 at 532.787 kb on - strand, within SMa0953 at 532.912 kb on + strand, within SMa0953 at 532.912 kb on + strand, within SMa0953 at 532.913 kb on - strand, within SMa0953 at 532.913 kb on - strand, within SMa0953 at 532.949 kb on + strand, within SMa0953 at 532.950 kb on - strand, within SMa0953 at 532.950 kb on - strand, within SMa0953 at 532.950 kb on - strand, within SMa0953 at 532.994 kb on + strand, within SMa0953 at 533.170 kb on + strand, within SMa0953 at 533.171 kb on - strand, within SMa0953 at 533.348 kb on - strand, within SMa0953 at 533.924 kb on - strand at 534.231 kb on + strand, within SMa0955 at 534.567 kb on + strand, within SMa0955 at 534.568 kb on - strand, within SMa0955 at 534.709 kb on - strand at 534.709 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 531,698 + -0.5 531,743 + -0.4 531,744 - -0.4 531,932 + SMa0952 0.22 +0.5 531,932 + SMa0952 0.22 +0.2 531,932 + SMa0952 0.22 -0.3 531,932 + SMa0952 0.22 -0.0 531,933 - SMa0952 0.22 -0.1 532,058 + SMa0952 0.36 +0.5 532,090 + SMa0952 0.39 -0.8 532,154 + SMa0952 0.47 +0.8 532,155 - SMa0952 0.47 +0.0 532,244 + SMa0952 0.57 -0.9 532,355 - SMa0952 0.69 +0.3 532,355 - SMa0952 0.69 -0.2 532,750 - SMa0953 0.11 -1.6 532,750 - SMa0953 0.11 -0.9 532,786 + SMa0953 0.14 -0.6 532,786 + SMa0953 0.14 -0.3 532,786 + SMa0953 0.14 +0.1 532,787 - SMa0953 0.14 -1.0 532,787 - SMa0953 0.14 +1.0 532,912 + SMa0953 0.26 -0.7 532,912 + SMa0953 0.26 -2.1 532,913 - SMa0953 0.26 -0.5 532,913 - SMa0953 0.26 +0.6 532,949 + SMa0953 0.29 +0.1 532,950 - SMa0953 0.29 +0.2 532,950 - SMa0953 0.29 -1.7 532,950 - SMa0953 0.29 -1.1 532,994 + SMa0953 0.33 +0.0 533,170 + SMa0953 0.49 -0.3 533,171 - SMa0953 0.49 -1.3 533,348 - SMa0953 0.65 +0.1 533,924 - -0.1 534,231 + SMa0955 0.31 -0.3 534,567 + SMa0955 0.79 -0.6 534,568 - SMa0955 0.79 +0.0 534,709 - +0.0 534,709 - -1.4
Or see this region's nucleotide sequence