Strain Fitness in Sinorhizobium meliloti 1021 around SMa0175

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0172 and SMa0175 are separated by 395 nucleotides SMa0172: SMa0172 - hypothetical protein, at 94,473 to 95,393 SMa0172 SMa0175: SMa0175 - hypothetical protein, at 95,789 to 96,871 SMa0175 Position (kb) 95 96 97Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 94.799 kb on + strand, within SMa0172at 94.800 kb on - strand, within SMa0172at 94.800 kb on - strand, within SMa0172at 94.800 kb on - strand, within SMa0172at 94.848 kb on + strand, within SMa0172at 94.849 kb on - strand, within SMa0172at 94.861 kb on - strand, within SMa0172at 95.034 kb on - strand, within SMa0172at 95.037 kb on + strand, within SMa0172at 95.038 kb on - strand, within SMa0172at 95.157 kb on + strand, within SMa0172at 95.216 kb on + strand, within SMa0172at 95.217 kb on - strand, within SMa0172at 95.309 kb on + strandat 95.310 kb on - strandat 95.310 kb on - strandat 95.344 kb on - strandat 95.373 kb on + strandat 95.373 kb on + strandat 95.388 kb on + strandat 95.388 kb on + strandat 95.389 kb on - strandat 95.527 kb on + strandat 95.528 kb on - strandat 95.529 kb on + strandat 95.529 kb on + strandat 95.529 kb on + strandat 95.530 kb on - strandat 95.530 kb on - strandat 95.531 kb on - strandat 95.568 kb on - strandat 95.697 kb on + strandat 95.768 kb on - strandat 95.904 kb on + strand, within SMa0175at 95.909 kb on + strand, within SMa0175at 95.910 kb on - strand, within SMa0175at 95.910 kb on - strand, within SMa0175at 95.970 kb on - strand, within SMa0175at 96.010 kb on + strand, within SMa0175at 96.010 kb on + strand, within SMa0175at 96.010 kb on + strand, within SMa0175at 96.010 kb on + strand, within SMa0175at 96.011 kb on - strand, within SMa0175at 96.011 kb on - strand, within SMa0175at 96.011 kb on - strand, within SMa0175at 96.013 kb on - strand, within SMa0175at 96.013 kb on - strand, within SMa0175at 96.014 kb on + strand, within SMa0175at 96.014 kb on + strand, within SMa0175at 96.015 kb on - strand, within SMa0175at 96.015 kb on - strand, within SMa0175at 96.015 kb on - strand, within SMa0175at 96.103 kb on - strand, within SMa0175at 96.103 kb on - strand, within SMa0175at 96.157 kb on - strand, within SMa0175at 96.270 kb on + strand, within SMa0175at 96.271 kb on - strand, within SMa0175at 96.271 kb on - strand, within SMa0175at 96.349 kb on + strand, within SMa0175at 96.350 kb on - strand, within SMa0175at 96.351 kb on + strand, within SMa0175at 96.351 kb on + strand, within SMa0175at 96.351 kb on + strand, within SMa0175at 96.351 kb on + strand, within SMa0175at 96.352 kb on - strand, within SMa0175at 96.352 kb on - strand, within SMa0175at 96.352 kb on - strand, within SMa0175at 96.352 kb on - strand, within SMa0175at 96.352 kb on - strand, within SMa0175at 96.447 kb on - strand, within SMa0175at 96.452 kb on + strand, within SMa0175at 96.452 kb on + strand, within SMa0175at 96.453 kb on - strand, within SMa0175at 96.453 kb on - strand, within SMa0175at 96.566 kb on - strand, within SMa0175at 96.580 kb on + strand, within SMa0175at 96.581 kb on - strand, within SMa0175at 96.589 kb on + strand, within SMa0175at 96.615 kb on + strand, within SMa0175at 96.615 kb on + strand, within SMa0175at 96.615 kb on + strand, within SMa0175at 96.793 kb on + strandat 96.953 kb on - strandat 97.036 kb on + strandat 97.037 kb on - strandat 97.056 kb on + strandat 97.056 kb on + strandat 97.056 kb on + strandat 97.057 kb on - strandat 97.057 kb on - strandat 97.057 kb on - strandat 97.057 kb on - strandat 97.058 kb on + strandat 97.058 kb on + strandat 97.059 kb on - strandat 97.148 kb on - strandat 97.265 kb on + strandat 97.266 kb on - strandat 97.266 kb on - strandat 97.266 kb on - strandat 97.349 kb on + strandat 97.350 kb on - strandat 97.350 kb on - strandat 97.350 kb on - strandat 97.350 kb on - strandat 97.350 kb on - strandat 97.353 kb on + strandat 97.353 kb on + strandat 97.353 kb on + strandat 97.558 kb on + strandat 97.559 kb on - strandat 97.563 kb on - strandat 97.563 kb on - strandat 97.563 kb on - strandat 97.606 kb on - strandat 97.646 kb on + strandat 97.647 kb on - strandat 97.647 kb on - strandat 97.677 kb on + strandat 97.698 kb on + strandat 97.698 kb on + strandat 97.698 kb on + strandat 97.699 kb on - strandat 97.751 kb on - strandat 97.865 kb on - strandat 97.866 kb on + strandat 97.867 kb on - strandat 97.867 kb on - strandat 97.867 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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94,799 + SMa0172 0.35 +0.5
94,800 - SMa0172 0.36 +0.1
94,800 - SMa0172 0.36 +0.1
94,800 - SMa0172 0.36 -0.8
94,848 + SMa0172 0.41 +0.3
94,849 - SMa0172 0.41 -0.7
94,861 - SMa0172 0.42 -0.3
95,034 - SMa0172 0.61 -0.3
95,037 + SMa0172 0.61 +0.8
95,038 - SMa0172 0.61 -1.2
95,157 + SMa0172 0.74 -0.4
95,216 + SMa0172 0.81 -0.2
95,217 - SMa0172 0.81 -1.0
95,309 + +1.1
95,310 - +0.2
95,310 - -1.0
95,344 - +0.4
95,373 + -1.4
95,373 + -0.4
95,388 + +0.9
95,388 + +0.6
95,389 - +1.0
95,527 + +0.2
95,528 - -1.3
95,529 + -0.2
95,529 + +0.3
95,529 + +0.0
95,530 - +0.5
95,530 - -0.4
95,531 - -0.1
95,568 - +2.0
95,697 + -1.4
95,768 - +0.1
95,904 + SMa0175 0.11 -0.1
95,909 + SMa0175 0.11 -0.5
95,910 - SMa0175 0.11 -0.5
95,910 - SMa0175 0.11 +0.9
95,970 - SMa0175 0.17 -1.0
96,010 + SMa0175 0.20 +1.0
96,010 + SMa0175 0.20 +0.4
96,010 + SMa0175 0.20 -0.1
96,010 + SMa0175 0.20 +0.5
96,011 - SMa0175 0.20 -0.8
96,011 - SMa0175 0.20 +0.5
96,011 - SMa0175 0.20 -1.1
96,013 - SMa0175 0.21 +0.6
96,013 - SMa0175 0.21 +0.4
96,014 + SMa0175 0.21 +0.4
96,014 + SMa0175 0.21 -3.1
96,015 - SMa0175 0.21 +0.2
96,015 - SMa0175 0.21 +1.1
96,015 - SMa0175 0.21 -2.1
96,103 - SMa0175 0.29 +1.2
96,103 - SMa0175 0.29 +0.1
96,157 - SMa0175 0.34 +0.8
96,270 + SMa0175 0.44 -1.2
96,271 - SMa0175 0.45 -0.3
96,271 - SMa0175 0.45 -0.4
96,349 + SMa0175 0.52 -0.1
96,350 - SMa0175 0.52 +0.3
96,351 + SMa0175 0.52 +1.1
96,351 + SMa0175 0.52 -0.9
96,351 + SMa0175 0.52 +0.8
96,351 + SMa0175 0.52 +0.1
96,352 - SMa0175 0.52 +0.5
96,352 - SMa0175 0.52 +0.1
96,352 - SMa0175 0.52 -2.6
96,352 - SMa0175 0.52 -0.0
96,352 - SMa0175 0.52 +0.1
96,447 - SMa0175 0.61 -0.4
96,452 + SMa0175 0.61 -0.1
96,452 + SMa0175 0.61 +0.7
96,453 - SMa0175 0.61 -0.2
96,453 - SMa0175 0.61 +1.4
96,566 - SMa0175 0.72 +1.0
96,580 + SMa0175 0.73 +0.3
96,581 - SMa0175 0.73 +0.3
96,589 + SMa0175 0.74 +0.6
96,615 + SMa0175 0.76 -0.1
96,615 + SMa0175 0.76 +0.4
96,615 + SMa0175 0.76 +0.5
96,793 + +0.4
96,953 - -2.4
97,036 + -0.9
97,037 - +0.9
97,056 + +0.1
97,056 + +0.5
97,056 + -0.1
97,057 - -1.3
97,057 - -0.4
97,057 - +0.1
97,057 - -1.6
97,058 + +0.7
97,058 + +0.2
97,059 - -0.1
97,148 - +0.2
97,265 + +0.7
97,266 - +0.8
97,266 - -0.1
97,266 - -0.2
97,349 + -0.1
97,350 - +0.0
97,350 - +0.2
97,350 - +0.3
97,350 - +0.1
97,350 - -0.8
97,353 + -1.8
97,353 + -1.6
97,353 + +0.2
97,558 + -1.3
97,559 - -0.0
97,563 - -0.8
97,563 - -1.5
97,563 - -0.2
97,606 - +0.4
97,646 + +0.2
97,647 - +0.2
97,647 - +0.2
97,677 + +0.3
97,698 + +0.1
97,698 + -0.6
97,698 + +0.0
97,699 - +0.1
97,751 - +0.2
97,865 - +0.2
97,866 + +0.3
97,867 - +0.5
97,867 - -1.0
97,867 - -0.3

Or see this region's nucleotide sequence