Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21406 and SM_b21407 are separated by 11 nucleotides SM_b21407 and SM_b21408 are separated by 105 nucleotides SM_b21408 and SM_b22015 are separated by 72 nucleotides SM_b22015 and SM_b21410 are separated by 392 nucleotides
SM_b21406: SM_b21406 - hypothetical protein, at 1,337,146 to 1,338,030
_b21406
SM_b21407: SM_b21407 - hypothetical protein, at 1,338,042 to 1,338,860
_b21407
SM_b21408: SM_b21408 - LysR family transcriptional regulator, at 1,338,966 to 1,339,325
_b21408
SM_b22015: SM_b22015 - LysR family transcriptional regulator, at 1,339,398 to 1,339,769
_b22015
SM_b21410: SM_b21410 - methyltransferase, S-adenosyl-L-methionine (SAM)-MTase, at 1,340,162 to 1,341,031
_b21410
Position (kb)
1338
1339
1340 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1338.028 kb on + strand at 1338.028 kb on + strand at 1338.028 kb on + strand at 1338.028 kb on + strand at 1338.029 kb on - strand at 1338.073 kb on - strand at 1338.189 kb on + strand, within SM_b21407 at 1338.190 kb on - strand, within SM_b21407 at 1338.243 kb on + strand, within SM_b21407 at 1338.243 kb on + strand, within SM_b21407 at 1338.384 kb on + strand, within SM_b21407 at 1338.385 kb on - strand, within SM_b21407 at 1338.390 kb on - strand, within SM_b21407 at 1338.390 kb on - strand, within SM_b21407 at 1338.445 kb on + strand, within SM_b21407 at 1338.445 kb on + strand, within SM_b21407 at 1338.508 kb on + strand, within SM_b21407 at 1338.508 kb on + strand, within SM_b21407 at 1338.508 kb on + strand, within SM_b21407 at 1338.508 kb on + strand, within SM_b21407 at 1338.508 kb on + strand, within SM_b21407 at 1338.536 kb on - strand, within SM_b21407 at 1338.579 kb on + strand, within SM_b21407 at 1338.579 kb on + strand, within SM_b21407 at 1338.579 kb on + strand, within SM_b21407 at 1338.579 kb on + strand, within SM_b21407 at 1338.580 kb on - strand, within SM_b21407 at 1338.580 kb on - strand, within SM_b21407 at 1338.580 kb on - strand, within SM_b21407 at 1338.713 kb on + strand, within SM_b21407 at 1338.714 kb on - strand, within SM_b21407 at 1338.746 kb on - strand, within SM_b21407 at 1338.746 kb on - strand, within SM_b21407 at 1338.858 kb on + strand at 1338.858 kb on + strand at 1338.880 kb on + strand at 1338.880 kb on + strand at 1338.881 kb on - strand at 1338.881 kb on - strand at 1338.921 kb on + strand at 1338.921 kb on + strand at 1338.922 kb on - strand at 1338.936 kb on + strand at 1338.936 kb on + strand at 1338.936 kb on + strand at 1338.995 kb on - strand at 1339.044 kb on - strand, within SM_b21408 at 1339.101 kb on + strand, within SM_b21408 at 1339.216 kb on + strand, within SM_b21408 at 1339.217 kb on - strand, within SM_b21408 at 1339.582 kb on + strand, within SM_b22015 at 1339.582 kb on + strand, within SM_b22015 at 1339.583 kb on - strand, within SM_b22015 at 1339.583 kb on - strand, within SM_b22015 at 1339.583 kb on - strand, within SM_b22015 at 1339.583 kb on - strand, within SM_b22015 at 1339.768 kb on - strand at 1339.768 kb on - strand at 1339.770 kb on + strand at 1340.083 kb on - strand at 1340.097 kb on + strand at 1340.128 kb on + strand at 1340.128 kb on + strand at 1340.128 kb on + strand at 1340.132 kb on + strand at 1340.133 kb on - strand at 1340.148 kb on + strand at 1340.148 kb on + strand at 1340.200 kb on + strand at 1340.201 kb on - strand at 1340.201 kb on - strand at 1340.206 kb on - strand at 1340.278 kb on + strand, within SM_b21410 at 1340.278 kb on + strand, within SM_b21410 at 1340.278 kb on + strand, within SM_b21410 at 1340.278 kb on + strand, within SM_b21410 at 1340.279 kb on - strand, within SM_b21410
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 1,338,028 + -0.2 1,338,028 + +0.0 1,338,028 + -0.2 1,338,028 + -0.6 1,338,029 - -0.1 1,338,073 - -0.5 1,338,189 + SM_b21407 0.18 +0.5 1,338,190 - SM_b21407 0.18 -0.3 1,338,243 + SM_b21407 0.25 +0.5 1,338,243 + SM_b21407 0.25 +0.5 1,338,384 + SM_b21407 0.42 -0.2 1,338,385 - SM_b21407 0.42 +0.4 1,338,390 - SM_b21407 0.42 +0.9 1,338,390 - SM_b21407 0.42 +1.4 1,338,445 + SM_b21407 0.49 +0.5 1,338,445 + SM_b21407 0.49 -0.2 1,338,508 + SM_b21407 0.57 +0.1 1,338,508 + SM_b21407 0.57 -2.1 1,338,508 + SM_b21407 0.57 +0.8 1,338,508 + SM_b21407 0.57 -0.6 1,338,508 + SM_b21407 0.57 +1.0 1,338,536 - SM_b21407 0.60 +0.1 1,338,579 + SM_b21407 0.66 -0.4 1,338,579 + SM_b21407 0.66 -0.1 1,338,579 + SM_b21407 0.66 +0.1 1,338,579 + SM_b21407 0.66 -0.4 1,338,580 - SM_b21407 0.66 +0.1 1,338,580 - SM_b21407 0.66 +0.5 1,338,580 - SM_b21407 0.66 -0.8 1,338,713 + SM_b21407 0.82 -1.4 1,338,714 - SM_b21407 0.82 -0.1 1,338,746 - SM_b21407 0.86 +0.6 1,338,746 - SM_b21407 0.86 +0.1 1,338,858 + +0.3 1,338,858 + +0.4 1,338,880 + -0.9 1,338,880 + +0.2 1,338,881 - -0.3 1,338,881 - -0.5 1,338,921 + -1.0 1,338,921 + +0.5 1,338,922 - +0.1 1,338,936 + +0.1 1,338,936 + +1.8 1,338,936 + +1.2 1,338,995 - +0.4 1,339,044 - SM_b21408 0.22 +0.5 1,339,101 + SM_b21408 0.38 +0.4 1,339,216 + SM_b21408 0.69 +0.4 1,339,217 - SM_b21408 0.70 +1.3 1,339,582 + SM_b22015 0.49 +0.4 1,339,582 + SM_b22015 0.49 -0.4 1,339,583 - SM_b22015 0.50 +0.9 1,339,583 - SM_b22015 0.50 +0.2 1,339,583 - SM_b22015 0.50 -2.2 1,339,583 - SM_b22015 0.50 +0.5 1,339,768 - +0.1 1,339,768 - +0.0 1,339,770 + -0.6 1,340,083 - +0.5 1,340,097 + +0.4 1,340,128 + +0.0 1,340,128 + -0.5 1,340,128 + +0.0 1,340,132 + -0.3 1,340,133 - -0.3 1,340,148 + +1.5 1,340,148 + -0.6 1,340,200 + +0.0 1,340,201 - +0.1 1,340,201 - +0.0 1,340,206 - +0.2 1,340,278 + SM_b21410 0.13 -0.7 1,340,278 + SM_b21410 0.13 -0.3 1,340,278 + SM_b21410 0.13 +0.0 1,340,278 + SM_b21410 0.13 +0.2 1,340,279 - SM_b21410 0.13 +0.5
Or see this region's nucleotide sequence