Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21326 and SM_b21327 overlap by 4 nucleotides SM_b21327 and SM_b21328 are separated by 45 nucleotides SM_b21328 and SM_b21329 are separated by 58 nucleotides
SM_b21326: SM_b21326 - dTDP-D-glucose 4,6-dehydratase, at 995,259 to 996,329
_b21326
SM_b21327: SM_b21327 - dTDP-4-dehydrorhamnose reductase, at 996,326 to 997,228
_b21327
SM_b21328: SM_b21328 - Sir2-like transcriptional silencer protein, at 997,274 to 998,092
_b21328
SM_b21329: SM_b21329 - hypothetical protein, at 998,151 to 998,321
_b21329
Position (kb) 996
997
998 Strain fitness (log2 ratio) -2
-1
0
1 at 995.364 kb on + strand at 995.365 kb on - strand at 995.365 kb on - strand at 995.365 kb on - strand at 995.412 kb on + strand, within SM_b21326 at 995.413 kb on - strand, within SM_b21326 at 995.413 kb on - strand, within SM_b21326 at 995.413 kb on - strand, within SM_b21326 at 995.546 kb on + strand, within SM_b21326 at 995.716 kb on - strand, within SM_b21326 at 995.744 kb on + strand, within SM_b21326 at 995.779 kb on - strand, within SM_b21326 at 995.779 kb on - strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.788 kb on + strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.827 kb on - strand, within SM_b21326 at 995.881 kb on + strand, within SM_b21326 at 995.882 kb on - strand, within SM_b21326 at 995.905 kb on - strand, within SM_b21326 at 995.905 kb on - strand, within SM_b21326 at 996.001 kb on - strand, within SM_b21326 at 996.001 kb on - strand, within SM_b21326 at 996.001 kb on - strand, within SM_b21326 at 996.184 kb on + strand, within SM_b21326 at 996.286 kb on - strand at 996.388 kb on + strand at 996.412 kb on + strand at 996.510 kb on - strand, within SM_b21327 at 996.510 kb on - strand, within SM_b21327 at 996.623 kb on - strand, within SM_b21327 at 996.635 kb on + strand, within SM_b21327 at 996.636 kb on - strand, within SM_b21327 at 996.636 kb on - strand, within SM_b21327 at 996.665 kb on + strand, within SM_b21327 at 996.666 kb on - strand, within SM_b21327 at 996.666 kb on - strand, within SM_b21327 at 996.666 kb on - strand, within SM_b21327 at 996.666 kb on - strand, within SM_b21327 at 996.694 kb on + strand, within SM_b21327 at 996.694 kb on + strand, within SM_b21327 at 996.783 kb on - strand, within SM_b21327 at 996.845 kb on - strand, within SM_b21327 at 996.913 kb on + strand, within SM_b21327 at 996.914 kb on - strand, within SM_b21327 at 996.988 kb on - strand, within SM_b21327 at 996.988 kb on - strand, within SM_b21327 at 997.227 kb on - strand at 997.416 kb on + strand, within SM_b21328 at 997.416 kb on + strand, within SM_b21328 at 997.416 kb on + strand, within SM_b21328 at 997.416 kb on + strand, within SM_b21328 at 997.416 kb on + strand, within SM_b21328 at 997.417 kb on - strand, within SM_b21328 at 997.417 kb on - strand, within SM_b21328 at 997.417 kb on - strand, within SM_b21328 at 997.644 kb on + strand, within SM_b21328 at 997.645 kb on - strand, within SM_b21328 at 997.710 kb on + strand, within SM_b21328 at 997.710 kb on + strand, within SM_b21328 at 997.732 kb on - strand, within SM_b21328 at 997.732 kb on - strand, within SM_b21328 at 997.755 kb on + strand, within SM_b21328 at 997.755 kb on + strand, within SM_b21328 at 997.756 kb on - strand, within SM_b21328 at 997.767 kb on + strand, within SM_b21328 at 997.768 kb on - strand, within SM_b21328 at 997.917 kb on + strand, within SM_b21328 at 998.132 kb on - strand at 998.152 kb on + strand at 998.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 995,364 + -0.7 995,365 - +0.2 995,365 - -2.7 995,365 - +0.0 995,412 + SM_b21326 0.14 -1.3 995,413 - SM_b21326 0.14 +0.1 995,413 - SM_b21326 0.14 -0.2 995,413 - SM_b21326 0.14 +0.0 995,546 + SM_b21326 0.27 +0.3 995,716 - SM_b21326 0.43 +0.9 995,744 + SM_b21326 0.45 -0.6 995,779 - SM_b21326 0.49 -0.3 995,779 - SM_b21326 0.49 +0.7 995,787 + SM_b21326 0.49 +0.2 995,787 + SM_b21326 0.49 -0.1 995,787 + SM_b21326 0.49 +0.6 995,787 + SM_b21326 0.49 -0.9 995,787 + SM_b21326 0.49 -0.2 995,788 + SM_b21326 0.49 -0.9 995,788 - SM_b21326 0.49 -0.1 995,788 - SM_b21326 0.49 +0.2 995,788 - SM_b21326 0.49 -0.5 995,788 - SM_b21326 0.49 +0.4 995,788 - SM_b21326 0.49 +0.0 995,788 - SM_b21326 0.49 +0.8 995,827 - SM_b21326 0.53 -1.3 995,881 + SM_b21326 0.58 +1.7 995,882 - SM_b21326 0.58 -0.6 995,905 - SM_b21326 0.60 -0.1 995,905 - SM_b21326 0.60 -0.3 996,001 - SM_b21326 0.69 +0.1 996,001 - SM_b21326 0.69 +0.4 996,001 - SM_b21326 0.69 -0.6 996,184 + SM_b21326 0.86 -0.5 996,286 - +0.2 996,388 + +0.1 996,412 + +0.0 996,510 - SM_b21327 0.20 -0.1 996,510 - SM_b21327 0.20 -0.7 996,623 - SM_b21327 0.33 +0.1 996,635 + SM_b21327 0.34 +0.5 996,636 - SM_b21327 0.34 -0.1 996,636 - SM_b21327 0.34 -2.2 996,665 + SM_b21327 0.38 +0.1 996,666 - SM_b21327 0.38 -0.2 996,666 - SM_b21327 0.38 -1.4 996,666 - SM_b21327 0.38 -0.7 996,666 - SM_b21327 0.38 +0.3 996,694 + SM_b21327 0.41 +0.0 996,694 + SM_b21327 0.41 -0.6 996,783 - SM_b21327 0.51 -0.1 996,845 - SM_b21327 0.57 -0.6 996,913 + SM_b21327 0.65 -1.6 996,914 - SM_b21327 0.65 -0.2 996,988 - SM_b21327 0.73 +0.8 996,988 - SM_b21327 0.73 -0.3 997,227 - +1.0 997,416 + SM_b21328 0.17 -0.1 997,416 + SM_b21328 0.17 -0.2 997,416 + SM_b21328 0.17 +0.3 997,416 + SM_b21328 0.17 -0.7 997,416 + SM_b21328 0.17 -0.3 997,417 - SM_b21328 0.17 -1.1 997,417 - SM_b21328 0.17 -0.1 997,417 - SM_b21328 0.17 -0.6 997,644 + SM_b21328 0.45 -0.2 997,645 - SM_b21328 0.45 +0.0 997,710 + SM_b21328 0.53 -1.2 997,710 + SM_b21328 0.53 -1.9 997,732 - SM_b21328 0.56 +0.3 997,732 - SM_b21328 0.56 +0.6 997,755 + SM_b21328 0.59 -0.8 997,755 + SM_b21328 0.59 +0.2 997,756 - SM_b21328 0.59 +0.1 997,767 + SM_b21328 0.60 +0.2 997,768 - SM_b21328 0.60 +0.7 997,917 + SM_b21328 0.79 -0.3 998,132 - -0.3 998,152 + -0.1 998,153 - +0.1
Or see this region's nucleotide sequence