Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21326

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21324 and SM_b21325 overlap by 8 nucleotidesSM_b21325 and SM_b21326 are separated by 11 nucleotidesSM_b21326 and SM_b21327 overlap by 4 nucleotidesSM_b21327 and SM_b21328 are separated by 45 nucleotides SM_b21324: SM_b21324 - glucose-1-phosphate thymidylyltransferase, at 993,810 to 994,691 _b21324 SM_b21325: SM_b21325 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 994,684 to 995,247 _b21325 SM_b21326: SM_b21326 - dTDP-D-glucose 4,6-dehydratase, at 995,259 to 996,329 _b21326 SM_b21327: SM_b21327 - dTDP-4-dehydrorhamnose reductase, at 996,326 to 997,228 _b21327 SM_b21328: SM_b21328 - Sir2-like transcriptional silencer protein, at 997,274 to 998,092 _b21328 Position (kb) 995 996 997Strain fitness (log2 ratio) -2 -1 0 1at 994.422 kb on + strand, within SM_b21324at 994.423 kb on - strand, within SM_b21324at 994.423 kb on - strand, within SM_b21324at 994.467 kb on + strand, within SM_b21324at 994.482 kb on - strand, within SM_b21324at 994.579 kb on + strand, within SM_b21324at 994.580 kb on - strand, within SM_b21324at 994.644 kb on + strandat 994.645 kb on - strandat 994.653 kb on + strandat 994.774 kb on + strand, within SM_b21325at 994.775 kb on - strand, within SM_b21325at 994.837 kb on + strand, within SM_b21325at 994.873 kb on + strand, within SM_b21325at 994.874 kb on - strand, within SM_b21325at 994.874 kb on - strand, within SM_b21325at 995.080 kb on + strand, within SM_b21325at 995.088 kb on - strand, within SM_b21325at 995.098 kb on + strand, within SM_b21325at 995.150 kb on + strand, within SM_b21325at 995.150 kb on + strand, within SM_b21325at 995.151 kb on - strand, within SM_b21325at 995.364 kb on + strandat 995.365 kb on - strandat 995.365 kb on - strandat 995.365 kb on - strandat 995.412 kb on + strand, within SM_b21326at 995.413 kb on - strand, within SM_b21326at 995.413 kb on - strand, within SM_b21326at 995.413 kb on - strand, within SM_b21326at 995.546 kb on + strand, within SM_b21326at 995.716 kb on - strand, within SM_b21326at 995.744 kb on + strand, within SM_b21326at 995.779 kb on - strand, within SM_b21326at 995.779 kb on - strand, within SM_b21326at 995.787 kb on + strand, within SM_b21326at 995.787 kb on + strand, within SM_b21326at 995.787 kb on + strand, within SM_b21326at 995.787 kb on + strand, within SM_b21326at 995.787 kb on + strand, within SM_b21326at 995.788 kb on + strand, within SM_b21326at 995.788 kb on - strand, within SM_b21326at 995.788 kb on - strand, within SM_b21326at 995.788 kb on - strand, within SM_b21326at 995.788 kb on - strand, within SM_b21326at 995.788 kb on - strand, within SM_b21326at 995.788 kb on - strand, within SM_b21326at 995.827 kb on - strand, within SM_b21326at 995.881 kb on + strand, within SM_b21326at 995.882 kb on - strand, within SM_b21326at 995.905 kb on - strand, within SM_b21326at 995.905 kb on - strand, within SM_b21326at 996.001 kb on - strand, within SM_b21326at 996.001 kb on - strand, within SM_b21326at 996.001 kb on - strand, within SM_b21326at 996.184 kb on + strand, within SM_b21326at 996.286 kb on - strandat 996.388 kb on + strandat 996.412 kb on + strandat 996.510 kb on - strand, within SM_b21327at 996.510 kb on - strand, within SM_b21327at 996.623 kb on - strand, within SM_b21327at 996.635 kb on + strand, within SM_b21327at 996.636 kb on - strand, within SM_b21327at 996.636 kb on - strand, within SM_b21327at 996.665 kb on + strand, within SM_b21327at 996.666 kb on - strand, within SM_b21327at 996.666 kb on - strand, within SM_b21327at 996.666 kb on - strand, within SM_b21327at 996.666 kb on - strand, within SM_b21327at 996.694 kb on + strand, within SM_b21327at 996.694 kb on + strand, within SM_b21327at 996.783 kb on - strand, within SM_b21327at 996.845 kb on - strand, within SM_b21327at 996.913 kb on + strand, within SM_b21327at 996.914 kb on - strand, within SM_b21327at 996.988 kb on - strand, within SM_b21327at 996.988 kb on - strand, within SM_b21327at 997.227 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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994,422 + SM_b21324 0.69 -0.1
994,423 - SM_b21324 0.70 +0.3
994,423 - SM_b21324 0.70 -1.1
994,467 + SM_b21324 0.74 -0.0
994,482 - SM_b21324 0.76 -0.5
994,579 + SM_b21324 0.87 +0.1
994,580 - SM_b21324 0.87 -0.7
994,644 + -0.5
994,645 - -0.2
994,653 + -0.4
994,774 + SM_b21325 0.16 +0.2
994,775 - SM_b21325 0.16 +0.3
994,837 + SM_b21325 0.27 -0.1
994,873 + SM_b21325 0.34 -0.1
994,874 - SM_b21325 0.34 -0.0
994,874 - SM_b21325 0.34 -0.1
995,080 + SM_b21325 0.70 -2.3
995,088 - SM_b21325 0.72 -1.2
995,098 + SM_b21325 0.73 -1.3
995,150 + SM_b21325 0.83 +0.1
995,150 + SM_b21325 0.83 +0.3
995,151 - SM_b21325 0.83 -0.5
995,364 + -0.7
995,365 - +0.2
995,365 - -2.7
995,365 - +0.0
995,412 + SM_b21326 0.14 -1.3
995,413 - SM_b21326 0.14 +0.1
995,413 - SM_b21326 0.14 -0.2
995,413 - SM_b21326 0.14 +0.0
995,546 + SM_b21326 0.27 +0.3
995,716 - SM_b21326 0.43 +0.9
995,744 + SM_b21326 0.45 -0.6
995,779 - SM_b21326 0.49 -0.3
995,779 - SM_b21326 0.49 +0.7
995,787 + SM_b21326 0.49 +0.2
995,787 + SM_b21326 0.49 -0.1
995,787 + SM_b21326 0.49 +0.6
995,787 + SM_b21326 0.49 -0.9
995,787 + SM_b21326 0.49 -0.2
995,788 + SM_b21326 0.49 -0.9
995,788 - SM_b21326 0.49 -0.1
995,788 - SM_b21326 0.49 +0.2
995,788 - SM_b21326 0.49 -0.5
995,788 - SM_b21326 0.49 +0.4
995,788 - SM_b21326 0.49 +0.0
995,788 - SM_b21326 0.49 +0.8
995,827 - SM_b21326 0.53 -1.3
995,881 + SM_b21326 0.58 +1.7
995,882 - SM_b21326 0.58 -0.6
995,905 - SM_b21326 0.60 -0.1
995,905 - SM_b21326 0.60 -0.3
996,001 - SM_b21326 0.69 +0.1
996,001 - SM_b21326 0.69 +0.4
996,001 - SM_b21326 0.69 -0.6
996,184 + SM_b21326 0.86 -0.5
996,286 - +0.2
996,388 + +0.1
996,412 + +0.0
996,510 - SM_b21327 0.20 -0.1
996,510 - SM_b21327 0.20 -0.7
996,623 - SM_b21327 0.33 +0.1
996,635 + SM_b21327 0.34 +0.5
996,636 - SM_b21327 0.34 -0.1
996,636 - SM_b21327 0.34 -2.2
996,665 + SM_b21327 0.38 +0.1
996,666 - SM_b21327 0.38 -0.2
996,666 - SM_b21327 0.38 -1.4
996,666 - SM_b21327 0.38 -0.7
996,666 - SM_b21327 0.38 +0.3
996,694 + SM_b21327 0.41 +0.0
996,694 + SM_b21327 0.41 -0.6
996,783 - SM_b21327 0.51 -0.1
996,845 - SM_b21327 0.57 -0.6
996,913 + SM_b21327 0.65 -1.6
996,914 - SM_b21327 0.65 -0.2
996,988 - SM_b21327 0.73 +0.8
996,988 - SM_b21327 0.73 -0.3
997,227 - +1.0

Or see this region's nucleotide sequence