Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21323 and SM_b21324 are separated by 22 nucleotides SM_b21324 and SM_b21325 overlap by 8 nucleotides SM_b21325 and SM_b21326 are separated by 11 nucleotides
SM_b21323: SM_b21323 - hypothetical protein, at 992,615 to 993,787
_b21323
SM_b21324: SM_b21324 - glucose-1-phosphate thymidylyltransferase, at 993,810 to 994,691
_b21324
SM_b21325: SM_b21325 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 994,684 to 995,247
_b21325
SM_b21326: SM_b21326 - dTDP-D-glucose 4,6-dehydratase, at 995,259 to 996,329
_b21326
Position (kb) 994
995
996 Strain fitness (log2 ratio) -2
-1
0
1 at 993.701 kb on + strand at 993.701 kb on + strand at 993.702 kb on - strand at 993.702 kb on - strand at 993.702 kb on - strand at 993.702 kb on - strand at 993.913 kb on - strand, within SM_b21324 at 993.913 kb on - strand, within SM_b21324 at 993.915 kb on + strand, within SM_b21324 at 993.945 kb on - strand, within SM_b21324 at 994.038 kb on + strand, within SM_b21324 at 994.039 kb on - strand, within SM_b21324 at 994.422 kb on + strand, within SM_b21324 at 994.423 kb on - strand, within SM_b21324 at 994.423 kb on - strand, within SM_b21324 at 994.467 kb on + strand, within SM_b21324 at 994.482 kb on - strand, within SM_b21324 at 994.579 kb on + strand, within SM_b21324 at 994.580 kb on - strand, within SM_b21324 at 994.644 kb on + strand at 994.645 kb on - strand at 994.653 kb on + strand at 994.774 kb on + strand, within SM_b21325 at 994.775 kb on - strand, within SM_b21325 at 994.837 kb on + strand, within SM_b21325 at 994.873 kb on + strand, within SM_b21325 at 994.874 kb on - strand, within SM_b21325 at 994.874 kb on - strand, within SM_b21325 at 995.080 kb on + strand, within SM_b21325 at 995.088 kb on - strand, within SM_b21325 at 995.098 kb on + strand, within SM_b21325 at 995.150 kb on + strand, within SM_b21325 at 995.150 kb on + strand, within SM_b21325 at 995.151 kb on - strand, within SM_b21325 at 995.364 kb on + strand at 995.365 kb on - strand at 995.365 kb on - strand at 995.365 kb on - strand at 995.412 kb on + strand, within SM_b21326 at 995.413 kb on - strand, within SM_b21326 at 995.413 kb on - strand, within SM_b21326 at 995.413 kb on - strand, within SM_b21326 at 995.546 kb on + strand, within SM_b21326 at 995.716 kb on - strand, within SM_b21326 at 995.744 kb on + strand, within SM_b21326 at 995.779 kb on - strand, within SM_b21326 at 995.779 kb on - strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.787 kb on + strand, within SM_b21326 at 995.788 kb on + strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.788 kb on - strand, within SM_b21326 at 995.827 kb on - strand, within SM_b21326 at 995.881 kb on + strand, within SM_b21326 at 995.882 kb on - strand, within SM_b21326 at 995.905 kb on - strand, within SM_b21326 at 995.905 kb on - strand, within SM_b21326 at 996.001 kb on - strand, within SM_b21326 at 996.001 kb on - strand, within SM_b21326 at 996.001 kb on - strand, within SM_b21326 at 996.184 kb on + strand, within SM_b21326
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 993,701 + -1.5 993,701 + -0.1 993,702 - -2.5 993,702 - -0.2 993,702 - -0.1 993,702 - -1.2 993,913 - SM_b21324 0.12 +0.0 993,913 - SM_b21324 0.12 -0.0 993,915 + SM_b21324 0.12 +0.2 993,945 - SM_b21324 0.15 +0.0 994,038 + SM_b21324 0.26 +0.3 994,039 - SM_b21324 0.26 +1.2 994,422 + SM_b21324 0.69 -0.1 994,423 - SM_b21324 0.70 +0.3 994,423 - SM_b21324 0.70 -1.1 994,467 + SM_b21324 0.74 -0.0 994,482 - SM_b21324 0.76 -0.5 994,579 + SM_b21324 0.87 +0.1 994,580 - SM_b21324 0.87 -0.7 994,644 + -0.5 994,645 - -0.2 994,653 + -0.4 994,774 + SM_b21325 0.16 +0.2 994,775 - SM_b21325 0.16 +0.3 994,837 + SM_b21325 0.27 -0.1 994,873 + SM_b21325 0.34 -0.1 994,874 - SM_b21325 0.34 -0.0 994,874 - SM_b21325 0.34 -0.1 995,080 + SM_b21325 0.70 -2.3 995,088 - SM_b21325 0.72 -1.2 995,098 + SM_b21325 0.73 -1.3 995,150 + SM_b21325 0.83 +0.1 995,150 + SM_b21325 0.83 +0.3 995,151 - SM_b21325 0.83 -0.5 995,364 + -0.7 995,365 - +0.2 995,365 - -2.7 995,365 - +0.0 995,412 + SM_b21326 0.14 -1.3 995,413 - SM_b21326 0.14 +0.1 995,413 - SM_b21326 0.14 -0.2 995,413 - SM_b21326 0.14 +0.0 995,546 + SM_b21326 0.27 +0.3 995,716 - SM_b21326 0.43 +0.9 995,744 + SM_b21326 0.45 -0.6 995,779 - SM_b21326 0.49 -0.3 995,779 - SM_b21326 0.49 +0.7 995,787 + SM_b21326 0.49 +0.2 995,787 + SM_b21326 0.49 -0.1 995,787 + SM_b21326 0.49 +0.6 995,787 + SM_b21326 0.49 -0.9 995,787 + SM_b21326 0.49 -0.2 995,788 + SM_b21326 0.49 -0.9 995,788 - SM_b21326 0.49 -0.1 995,788 - SM_b21326 0.49 +0.2 995,788 - SM_b21326 0.49 -0.5 995,788 - SM_b21326 0.49 +0.4 995,788 - SM_b21326 0.49 +0.0 995,788 - SM_b21326 0.49 +0.8 995,827 - SM_b21326 0.53 -1.3 995,881 + SM_b21326 0.58 +1.7 995,882 - SM_b21326 0.58 -0.6 995,905 - SM_b21326 0.60 -0.1 995,905 - SM_b21326 0.60 -0.3 996,001 - SM_b21326 0.69 +0.1 996,001 - SM_b21326 0.69 +0.4 996,001 - SM_b21326 0.69 -0.6 996,184 + SM_b21326 0.86 -0.5
Or see this region's nucleotide sequence