Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21274

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21273 and SM_b21274 are separated by 16 nucleotidesSM_b21274 and SM_b21275 overlap by 4 nucleotides SM_b21273: SM_b21273 - spermidineputrescine ABC transporter substrate-binding protein precursor, at 847,044 to 848,066 _b21273 SM_b21274: SM_b21274 - spermidine/putrescine ABC transporter permease, at 848,083 to 848,982 _b21274 SM_b21275: SM_b21275 - spermidineputrescine ABC transporter permease, at 848,979 to 849,758 _b21275 Position (kb) 848 849Strain fitness (log2 ratio) -2 -1 0 1 2at 847.122 kb on - strandat 847.122 kb on - strandat 847.134 kb on + strandat 847.170 kb on + strand, within SM_b21273at 847.170 kb on + strand, within SM_b21273at 847.343 kb on + strand, within SM_b21273at 847.344 kb on - strand, within SM_b21273at 847.374 kb on + strand, within SM_b21273at 847.420 kb on - strand, within SM_b21273at 847.446 kb on + strand, within SM_b21273at 847.446 kb on + strand, within SM_b21273at 847.587 kb on - strand, within SM_b21273at 847.962 kb on + strand, within SM_b21273at 847.962 kb on + strand, within SM_b21273at 847.963 kb on - strand, within SM_b21273at 847.963 kb on - strand, within SM_b21273at 848.120 kb on - strandat 848.120 kb on - strandat 848.151 kb on - strandat 848.468 kb on + strand, within SM_b21274at 848.488 kb on + strand, within SM_b21274at 848.800 kb on + strand, within SM_b21274at 848.800 kb on + strand, within SM_b21274at 848.800 kb on + strand, within SM_b21274at 848.800 kb on + strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.802 kb on + strand, within SM_b21274at 848.802 kb on + strand, within SM_b21274at 849.229 kb on - strand, within SM_b21275at 849.328 kb on + strand, within SM_b21275at 849.328 kb on + strand, within SM_b21275at 849.329 kb on - strand, within SM_b21275at 849.329 kb on - strand, within SM_b21275at 849.334 kb on - strand, within SM_b21275at 849.334 kb on - strand, within SM_b21275at 849.359 kb on + strand, within SM_b21275at 849.359 kb on + strand, within SM_b21275at 849.642 kb on + strand, within SM_b21275at 849.643 kb on - strand, within SM_b21275at 849.643 kb on - strand, within SM_b21275at 849.657 kb on + strand, within SM_b21275at 849.657 kb on + strand, within SM_b21275at 849.657 kb on + strand, within SM_b21275at 849.658 kb on - strand, within SM_b21275at 849.658 kb on - strand, within SM_b21275at 849.658 kb on - strand, within SM_b21275at 849.658 kb on - strand, within SM_b21275at 849.658 kb on - strand, within SM_b21275at 849.750 kb on + strandat 849.796 kb on + strandat 849.936 kb on + strandat 849.937 kb on - strandat 849.960 kb on + strandat 849.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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847,122 - -0.3
847,122 - +0.2
847,134 + -0.1
847,170 + SM_b21273 0.12 +0.0
847,170 + SM_b21273 0.12 +0.1
847,343 + SM_b21273 0.29 -0.7
847,344 - SM_b21273 0.29 +0.0
847,374 + SM_b21273 0.32 -0.1
847,420 - SM_b21273 0.37 -1.6
847,446 + SM_b21273 0.39 +1.0
847,446 + SM_b21273 0.39 +0.4
847,587 - SM_b21273 0.53 -0.2
847,962 + SM_b21273 0.90 -0.3
847,962 + SM_b21273 0.90 -1.5
847,963 - SM_b21273 0.90 -0.6
847,963 - SM_b21273 0.90 -0.2
848,120 - +0.4
848,120 - -1.1
848,151 - -2.1
848,468 + SM_b21274 0.43 -0.2
848,488 + SM_b21274 0.45 +0.5
848,800 + SM_b21274 0.80 -0.2
848,800 + SM_b21274 0.80 +0.7
848,800 + SM_b21274 0.80 +0.3
848,800 + SM_b21274 0.80 -0.4
848,801 - SM_b21274 0.80 -0.3
848,801 - SM_b21274 0.80 +1.3
848,801 - SM_b21274 0.80 -0.1
848,801 - SM_b21274 0.80 +1.2
848,801 - SM_b21274 0.80 +1.9
848,801 - SM_b21274 0.80 -0.2
848,801 - SM_b21274 0.80 +0.2
848,801 - SM_b21274 0.80 -0.5
848,801 - SM_b21274 0.80 +0.2
848,801 - SM_b21274 0.80 +0.7
848,801 - SM_b21274 0.80 +0.5
848,802 + SM_b21274 0.80 +0.2
848,802 + SM_b21274 0.80 +0.0
849,229 - SM_b21275 0.32 -0.2
849,328 + SM_b21275 0.45 -0.1
849,328 + SM_b21275 0.45 +0.1
849,329 - SM_b21275 0.45 -0.8
849,329 - SM_b21275 0.45 +0.3
849,334 - SM_b21275 0.46 -0.3
849,334 - SM_b21275 0.46 +1.5
849,359 + SM_b21275 0.49 +0.4
849,359 + SM_b21275 0.49 +0.5
849,642 + SM_b21275 0.85 +0.4
849,643 - SM_b21275 0.85 -2.0
849,643 - SM_b21275 0.85 -0.2
849,657 + SM_b21275 0.87 -0.6
849,657 + SM_b21275 0.87 +1.0
849,657 + SM_b21275 0.87 +0.2
849,658 - SM_b21275 0.87 -0.4
849,658 - SM_b21275 0.87 -0.3
849,658 - SM_b21275 0.87 +0.1
849,658 - SM_b21275 0.87 +0.5
849,658 - SM_b21275 0.87 +0.6
849,750 + -0.1
849,796 + -0.2
849,936 + +0.6
849,937 - +0.9
849,960 + -0.1
849,961 - -0.0

Or see this region's nucleotide sequence