Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21270 and SM_b21271 are separated by 83 nucleotides SM_b21271 and SM_b21272 are separated by 147 nucleotides SM_b21272 and SM_b21273 overlap by 4 nucleotides
SM_b21270: SM_b21270 - transcriptional regulator, at 844,532 to 844,996
_b21270
SM_b21271: SM_b21271 - nucleotide-binding protein, at 845,080 to 845,829
_b21271
SM_b21272: SM_b21272 - LacI family transcriptional regulator, at 845,977 to 847,047
_b21272
SM_b21273: SM_b21273 - spermidineputrescine ABC transporter substrate-binding protein precursor, at 847,044 to 848,066
_b21273
Position (kb)
845
846
847
848 Strain fitness (log2 ratio)
-2
-1
0
1 at 845.068 kb on + strand at 845.069 kb on - strand at 845.096 kb on - strand at 845.096 kb on - strand at 845.113 kb on + strand at 845.224 kb on + strand, within SM_b21271 at 845.225 kb on - strand, within SM_b21271 at 845.225 kb on - strand, within SM_b21271 at 845.227 kb on - strand, within SM_b21271 at 845.566 kb on + strand, within SM_b21271 at 845.566 kb on + strand, within SM_b21271 at 845.567 kb on - strand, within SM_b21271 at 845.715 kb on - strand, within SM_b21271 at 845.715 kb on - strand, within SM_b21271 at 845.882 kb on + strand at 845.883 kb on - strand at 845.883 kb on - strand at 845.883 kb on - strand at 845.883 kb on - strand at 845.885 kb on + strand at 845.885 kb on + strand at 845.927 kb on + strand at 845.928 kb on - strand at 845.970 kb on + strand at 845.970 kb on + strand at 845.971 kb on - strand at 846.008 kb on + strand at 846.008 kb on + strand at 846.008 kb on + strand at 846.009 kb on - strand at 846.009 kb on - strand at 846.532 kb on - strand, within SM_b21272 at 846.532 kb on - strand, within SM_b21272 at 846.835 kb on - strand, within SM_b21272 at 846.835 kb on - strand, within SM_b21272 at 846.835 kb on - strand, within SM_b21272 at 846.948 kb on + strand at 846.948 kb on + strand at 846.948 kb on + strand at 846.949 kb on - strand at 846.949 kb on - strand at 846.949 kb on - strand at 847.014 kb on - strand at 847.122 kb on - strand at 847.122 kb on - strand at 847.134 kb on + strand at 847.170 kb on + strand, within SM_b21273 at 847.170 kb on + strand, within SM_b21273 at 847.343 kb on + strand, within SM_b21273 at 847.344 kb on - strand, within SM_b21273 at 847.374 kb on + strand, within SM_b21273 at 847.420 kb on - strand, within SM_b21273 at 847.446 kb on + strand, within SM_b21273 at 847.446 kb on + strand, within SM_b21273 at 847.587 kb on - strand, within SM_b21273 at 847.962 kb on + strand, within SM_b21273 at 847.962 kb on + strand, within SM_b21273 at 847.963 kb on - strand, within SM_b21273 at 847.963 kb on - strand, within SM_b21273
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 845,068 + -0.3 845,069 - -1.1 845,096 - +1.0 845,096 - +0.3 845,113 + +0.4 845,224 + SM_b21271 0.19 -0.5 845,225 - SM_b21271 0.19 +0.6 845,225 - SM_b21271 0.19 +0.1 845,227 - SM_b21271 0.20 +0.1 845,566 + SM_b21271 0.65 +0.5 845,566 + SM_b21271 0.65 +0.2 845,567 - SM_b21271 0.65 +0.4 845,715 - SM_b21271 0.85 +0.7 845,715 - SM_b21271 0.85 +0.2 845,882 + +0.4 845,883 - -1.8 845,883 - -0.3 845,883 - +0.5 845,883 - +0.2 845,885 + -0.1 845,885 + +0.2 845,927 + -0.3 845,928 - +0.2 845,970 + +0.3 845,970 + -0.2 845,971 - -0.8 846,008 + -0.5 846,008 + -0.2 846,008 + +0.2 846,009 - -1.2 846,009 - +1.1 846,532 - SM_b21272 0.52 +0.3 846,532 - SM_b21272 0.52 +0.1 846,835 - SM_b21272 0.80 +0.3 846,835 - SM_b21272 0.80 +0.9 846,835 - SM_b21272 0.80 +1.2 846,948 + -0.8 846,948 + -0.2 846,948 + -0.6 846,949 - +0.4 846,949 - -0.4 846,949 - +0.4 847,014 - +0.1 847,122 - -0.3 847,122 - +0.2 847,134 + -0.1 847,170 + SM_b21273 0.12 +0.0 847,170 + SM_b21273 0.12 +0.1 847,343 + SM_b21273 0.29 -0.7 847,344 - SM_b21273 0.29 +0.0 847,374 + SM_b21273 0.32 -0.1 847,420 - SM_b21273 0.37 -1.6 847,446 + SM_b21273 0.39 +1.0 847,446 + SM_b21273 0.39 +0.4 847,587 - SM_b21273 0.53 -0.2 847,962 + SM_b21273 0.90 -0.3 847,962 + SM_b21273 0.90 -1.5 847,963 - SM_b21273 0.90 -0.6 847,963 - SM_b21273 0.90 -0.2
Or see this region's nucleotide sequence