Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21181 and SM_b21182 are separated by 11 nucleotides SM_b21182 and SM_b21183 are separated by 189 nucleotides
SM_b21181: SM_b21181 - glutaryl-CoA dehydrogenase, at 927,980 to 929,167
_b21181
SM_b21182: SM_b21182 - hypothetical protein, at 929,179 to 930,363
_b21182
SM_b21183: SM_b21183 - molecular chaperone HtpG, at 930,553 to 932,442
_b21183
Position (kb) 929
930
931 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 928.196 kb on + strand, within SM_b21181 at 928.196 kb on + strand, within SM_b21181 at 928.196 kb on + strand, within SM_b21181 at 928.197 kb on - strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.227 kb on - strand, within SM_b21181 at 928.307 kb on + strand, within SM_b21181 at 928.349 kb on + strand, within SM_b21181 at 928.515 kb on + strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.653 kb on + strand, within SM_b21181 at 929.096 kb on + strand at 929.096 kb on + strand at 929.369 kb on - strand, within SM_b21182 at 929.506 kb on + strand, within SM_b21182 at 929.519 kb on - strand, within SM_b21182 at 929.554 kb on + strand, within SM_b21182 at 929.554 kb on + strand, within SM_b21182 at 929.554 kb on + strand, within SM_b21182 at 929.555 kb on - strand, within SM_b21182 at 929.591 kb on - strand, within SM_b21182 at 929.591 kb on - strand, within SM_b21182 at 929.614 kb on + strand, within SM_b21182 at 929.614 kb on + strand, within SM_b21182 at 929.614 kb on + strand, within SM_b21182 at 929.700 kb on + strand, within SM_b21182 at 929.701 kb on - strand, within SM_b21182 at 929.887 kb on - strand, within SM_b21182 at 930.083 kb on - strand, within SM_b21182 at 930.159 kb on - strand, within SM_b21182 at 930.312 kb on + strand at 930.367 kb on - strand at 930.367 kb on - strand at 930.382 kb on + strand at 930.382 kb on + strand at 930.383 kb on - strand at 930.383 kb on - strand at 930.384 kb on + strand at 930.385 kb on - strand at 930.385 kb on - strand at 930.546 kb on + strand at 930.546 kb on + strand at 930.546 kb on + strand at 931.158 kb on - strand, within SM_b21183 at 931.160 kb on + strand, within SM_b21183 at 931.160 kb on + strand, within SM_b21183 at 931.160 kb on + strand, within SM_b21183 at 931.161 kb on - strand, within SM_b21183 at 931.161 kb on - strand, within SM_b21183 at 931.161 kb on - strand, within SM_b21183 at 931.161 kb on - strand, within SM_b21183 at 931.161 kb on - strand, within SM_b21183 at 931.161 kb on - strand, within SM_b21183 at 931.196 kb on + strand, within SM_b21183 at 931.197 kb on - strand, within SM_b21183 at 931.197 kb on - strand, within SM_b21183 at 931.286 kb on + strand, within SM_b21183 at 931.286 kb on + strand, within SM_b21183 at 931.287 kb on - strand, within SM_b21183
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 928,196 + SM_b21181 0.18 -0.4 928,196 + SM_b21181 0.18 -1.0 928,196 + SM_b21181 0.18 -1.4 928,197 - SM_b21181 0.18 -4.2 928,217 + SM_b21181 0.20 -0.4 928,217 + SM_b21181 0.20 -0.6 928,217 + SM_b21181 0.20 -0.8 928,227 - SM_b21181 0.21 -2.3 928,307 + SM_b21181 0.28 +0.1 928,349 + SM_b21181 0.31 -0.6 928,515 + SM_b21181 0.45 -0.8 928,516 - SM_b21181 0.45 -0.5 928,516 - SM_b21181 0.45 -0.1 928,516 - SM_b21181 0.45 -1.5 928,653 + SM_b21181 0.57 -0.4 929,096 + -0.6 929,096 + -0.5 929,369 - SM_b21182 0.16 -1.4 929,506 + SM_b21182 0.28 -0.5 929,519 - SM_b21182 0.29 -0.8 929,554 + SM_b21182 0.32 -1.8 929,554 + SM_b21182 0.32 -0.8 929,554 + SM_b21182 0.32 -1.2 929,555 - SM_b21182 0.32 -1.6 929,591 - SM_b21182 0.35 -0.4 929,591 - SM_b21182 0.35 -1.4 929,614 + SM_b21182 0.37 -0.0 929,614 + SM_b21182 0.37 -1.4 929,614 + SM_b21182 0.37 -1.8 929,700 + SM_b21182 0.44 -0.3 929,701 - SM_b21182 0.44 -2.3 929,887 - SM_b21182 0.60 +0.9 930,083 - SM_b21182 0.76 -1.7 930,159 - SM_b21182 0.83 -0.1 930,312 + -0.4 930,367 - +0.6 930,367 - +1.6 930,382 + -0.4 930,382 + -0.3 930,383 - +0.2 930,383 - +0.5 930,384 + -0.3 930,385 - -0.7 930,385 - +0.8 930,546 + +0.4 930,546 + -0.8 930,546 + +0.2 931,158 - SM_b21183 0.32 +0.2 931,160 + SM_b21183 0.32 +0.6 931,160 + SM_b21183 0.32 -0.5 931,160 + SM_b21183 0.32 +0.2 931,161 - SM_b21183 0.32 +0.9 931,161 - SM_b21183 0.32 +1.0 931,161 - SM_b21183 0.32 -0.6 931,161 - SM_b21183 0.32 +0.2 931,161 - SM_b21183 0.32 -1.0 931,161 - SM_b21183 0.32 +0.0 931,196 + SM_b21183 0.34 -0.6 931,197 - SM_b21183 0.34 +0.4 931,197 - SM_b21183 0.34 +0.5 931,286 + SM_b21183 0.39 -0.1 931,286 + SM_b21183 0.39 +1.9 931,287 - SM_b21183 0.39 +0.1
Or see this region's nucleotide sequence