Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21180 and SM_b21181 are separated by 187 nucleotides SM_b21181 and SM_b21182 are separated by 11 nucleotides
SM_b21180: SM_b21180 - LysR family transcriptional regulator, at 926,839 to 927,792
_b21180
SM_b21181: SM_b21181 - glutaryl-CoA dehydrogenase, at 927,980 to 929,167
_b21181
SM_b21182: SM_b21182 - hypothetical protein, at 929,179 to 930,363
_b21182
Position (kb) 927
928
929
930 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 927.188 kb on + strand, within SM_b21180 at 927.188 kb on + strand, within SM_b21180 at 927.189 kb on - strand, within SM_b21180 at 927.257 kb on + strand, within SM_b21180 at 927.257 kb on + strand, within SM_b21180 at 927.308 kb on - strand, within SM_b21180 at 927.815 kb on + strand at 927.816 kb on - strand at 927.820 kb on + strand at 927.821 kb on - strand at 927.827 kb on - strand at 927.975 kb on + strand at 927.975 kb on + strand at 927.976 kb on - strand at 927.976 kb on - strand at 927.976 kb on - strand at 928.077 kb on - strand at 928.077 kb on - strand at 928.196 kb on + strand, within SM_b21181 at 928.196 kb on + strand, within SM_b21181 at 928.196 kb on + strand, within SM_b21181 at 928.197 kb on - strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.227 kb on - strand, within SM_b21181 at 928.307 kb on + strand, within SM_b21181 at 928.349 kb on + strand, within SM_b21181 at 928.515 kb on + strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.653 kb on + strand, within SM_b21181 at 929.096 kb on + strand at 929.096 kb on + strand at 929.369 kb on - strand, within SM_b21182 at 929.506 kb on + strand, within SM_b21182 at 929.519 kb on - strand, within SM_b21182 at 929.554 kb on + strand, within SM_b21182 at 929.554 kb on + strand, within SM_b21182 at 929.554 kb on + strand, within SM_b21182 at 929.555 kb on - strand, within SM_b21182 at 929.591 kb on - strand, within SM_b21182 at 929.591 kb on - strand, within SM_b21182 at 929.614 kb on + strand, within SM_b21182 at 929.614 kb on + strand, within SM_b21182 at 929.614 kb on + strand, within SM_b21182 at 929.700 kb on + strand, within SM_b21182 at 929.701 kb on - strand, within SM_b21182 at 929.887 kb on - strand, within SM_b21182 at 930.083 kb on - strand, within SM_b21182 at 930.159 kb on - strand, within SM_b21182
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 927,188 + SM_b21180 0.37 +1.2 927,188 + SM_b21180 0.37 +0.2 927,189 - SM_b21180 0.37 -1.7 927,257 + SM_b21180 0.44 +0.9 927,257 + SM_b21180 0.44 +0.3 927,308 - SM_b21180 0.49 -0.2 927,815 + +1.7 927,816 - +0.1 927,820 + -0.1 927,821 - -1.4 927,827 - +0.2 927,975 + -0.8 927,975 + -0.5 927,976 - -2.9 927,976 - -2.3 927,976 - -0.4 928,077 - -1.3 928,077 - -1.4 928,196 + SM_b21181 0.18 -0.4 928,196 + SM_b21181 0.18 -1.0 928,196 + SM_b21181 0.18 -1.4 928,197 - SM_b21181 0.18 -4.2 928,217 + SM_b21181 0.20 -0.4 928,217 + SM_b21181 0.20 -0.6 928,217 + SM_b21181 0.20 -0.8 928,227 - SM_b21181 0.21 -2.3 928,307 + SM_b21181 0.28 +0.1 928,349 + SM_b21181 0.31 -0.6 928,515 + SM_b21181 0.45 -0.8 928,516 - SM_b21181 0.45 -0.5 928,516 - SM_b21181 0.45 -0.1 928,516 - SM_b21181 0.45 -1.5 928,653 + SM_b21181 0.57 -0.4 929,096 + -0.6 929,096 + -0.5 929,369 - SM_b21182 0.16 -1.4 929,506 + SM_b21182 0.28 -0.5 929,519 - SM_b21182 0.29 -0.8 929,554 + SM_b21182 0.32 -1.8 929,554 + SM_b21182 0.32 -0.8 929,554 + SM_b21182 0.32 -1.2 929,555 - SM_b21182 0.32 -1.6 929,591 - SM_b21182 0.35 -0.4 929,591 - SM_b21182 0.35 -1.4 929,614 + SM_b21182 0.37 -0.0 929,614 + SM_b21182 0.37 -1.4 929,614 + SM_b21182 0.37 -1.8 929,700 + SM_b21182 0.44 -0.3 929,701 - SM_b21182 0.44 -2.3 929,887 - SM_b21182 0.60 +0.9 930,083 - SM_b21182 0.76 -1.7 930,159 - SM_b21182 0.83 -0.1
Or see this region's nucleotide sequence