Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21094

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21093 and SM_b21094 are separated by 194 nucleotidesSM_b21094 and SM_b21095 overlap by 4 nucleotidesSM_b21095 and SM_b21096 are separated by 8 nucleotides SM_b21093: SM_b21093 - LysR family transcriptional regulator, at 735,413 to 736,315 _b21093 SM_b21094: SM_b21094 - argininosuccinate lyase, at 736,510 to 737,976 _b21094 SM_b21095: SM_b21095 - amino acid ABC transporter permease, at 737,973 to 738,845 _b21095 SM_b21096: SM_b21096 - amino acid transporter ABC transporter ATP-binding protein, at 738,854 to 739,624 _b21096 Position (kb) 736 737 738Strain fitness (log2 ratio) -2 -1 0 1 2 3at 735.577 kb on + strand, within SM_b21093at 735.639 kb on + strand, within SM_b21093at 735.640 kb on - strand, within SM_b21093at 735.640 kb on - strand, within SM_b21093at 735.640 kb on - strand, within SM_b21093at 735.702 kb on + strand, within SM_b21093at 735.703 kb on - strand, within SM_b21093at 735.703 kb on - strand, within SM_b21093at 735.792 kb on + strand, within SM_b21093at 735.792 kb on + strand, within SM_b21093at 735.793 kb on - strand, within SM_b21093at 735.834 kb on + strand, within SM_b21093at 735.834 kb on + strand, within SM_b21093at 735.834 kb on + strandat 735.834 kb on + strand, within SM_b21093at 735.834 kb on + strand, within SM_b21093at 735.834 kb on + strand, within SM_b21093at 735.835 kb on - strand, within SM_b21093at 735.878 kb on + strand, within SM_b21093at 735.878 kb on + strand, within SM_b21093at 735.879 kb on - strand, within SM_b21093at 736.099 kb on + strand, within SM_b21093at 736.101 kb on + strand, within SM_b21093at 736.101 kb on + strand, within SM_b21093at 736.102 kb on - strand, within SM_b21093at 736.102 kb on - strand, within SM_b21093at 736.389 kb on - strandat 736.389 kb on - strandat 736.393 kb on - strandat 736.609 kb on + strandat 736.773 kb on + strand, within SM_b21094at 736.877 kb on - strand, within SM_b21094at 736.956 kb on + strand, within SM_b21094at 736.956 kb on + strand, within SM_b21094at 736.980 kb on + strand, within SM_b21094at 736.981 kb on - strand, within SM_b21094at 737.240 kb on + strand, within SM_b21094at 737.240 kb on + strand, within SM_b21094at 737.240 kb on + strand, within SM_b21094at 737.240 kb on + strand, within SM_b21094at 737.240 kb on + strand, within SM_b21094at 737.240 kb on + strand, within SM_b21094at 737.241 kb on - strand, within SM_b21094at 737.301 kb on + strand, within SM_b21094at 737.301 kb on + strand, within SM_b21094at 737.302 kb on - strand, within SM_b21094at 737.336 kb on - strand, within SM_b21094at 737.468 kb on - strand, within SM_b21094at 737.481 kb on - strand, within SM_b21094at 737.680 kb on - strand, within SM_b21094at 738.015 kb on + strandat 738.053 kb on + strandat 738.141 kb on + strand, within SM_b21095at 738.141 kb on + strand, within SM_b21095at 738.142 kb on - strand, within SM_b21095at 738.142 kb on - strand, within SM_b21095at 738.186 kb on + strand, within SM_b21095at 738.187 kb on - strand, within SM_b21095at 738.187 kb on - strand, within SM_b21095at 738.300 kb on + strand, within SM_b21095at 738.301 kb on - strand, within SM_b21095at 738.302 kb on + strand, within SM_b21095at 738.302 kb on + strand, within SM_b21095at 738.303 kb on - strand, within SM_b21095at 738.303 kb on - strand, within SM_b21095at 738.303 kb on - strand, within SM_b21095at 738.303 kb on - strand, within SM_b21095at 738.303 kb on - strand, within SM_b21095at 738.303 kb on - strandat 738.473 kb on + strand, within SM_b21095at 738.473 kb on + strand, within SM_b21095at 738.473 kb on + strand, within SM_b21095at 738.474 kb on - strand, within SM_b21095at 738.522 kb on + strand, within SM_b21095at 738.679 kb on + strand, within SM_b21095at 738.702 kb on + strand, within SM_b21095at 738.702 kb on + strand, within SM_b21095at 738.702 kb on + strand, within SM_b21095at 738.702 kb on + strand, within SM_b21095at 738.703 kb on - strand, within SM_b21095at 738.703 kb on - strand, within SM_b21095at 738.792 kb on + strandat 738.793 kb on - strandat 738.793 kb on - strandat 738.793 kb on - strandat 738.794 kb on + strandat 738.865 kb on + strandat 738.866 kb on - strandat 738.866 kb on - strandat 738.899 kb on + strandat 738.900 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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735,577 + SM_b21093 0.18 -0.7
735,639 + SM_b21093 0.25 -0.4
735,640 - SM_b21093 0.25 -0.3
735,640 - SM_b21093 0.25 +0.0
735,640 - SM_b21093 0.25 +0.1
735,702 + SM_b21093 0.32 -0.6
735,703 - SM_b21093 0.32 -1.2
735,703 - SM_b21093 0.32 +0.1
735,792 + SM_b21093 0.42 +0.2
735,792 + SM_b21093 0.42 -0.1
735,793 - SM_b21093 0.42 +0.1
735,834 + SM_b21093 0.47 +0.3
735,834 + SM_b21093 0.47 -1.7
735,834 + +0.5
735,834 + SM_b21093 0.47 +0.1
735,834 + SM_b21093 0.47 +0.1
735,834 + SM_b21093 0.47 +0.5
735,835 - SM_b21093 0.47 +0.3
735,878 + SM_b21093 0.51 +0.3
735,878 + SM_b21093 0.51 -1.0
735,879 - SM_b21093 0.52 +0.5
736,099 + SM_b21093 0.76 +0.2
736,101 + SM_b21093 0.76 +0.6
736,101 + SM_b21093 0.76 +0.1
736,102 - SM_b21093 0.76 -0.9
736,102 - SM_b21093 0.76 -1.1
736,389 - -0.0
736,389 - +0.4
736,393 - +0.1
736,609 + -0.3
736,773 + SM_b21094 0.18 -0.1
736,877 - SM_b21094 0.25 +1.0
736,956 + SM_b21094 0.30 +0.7
736,956 + SM_b21094 0.30 -0.4
736,980 + SM_b21094 0.32 +0.6
736,981 - SM_b21094 0.32 -0.3
737,240 + SM_b21094 0.50 +0.7
737,240 + SM_b21094 0.50 -0.3
737,240 + SM_b21094 0.50 -1.1
737,240 + SM_b21094 0.50 +1.8
737,240 + SM_b21094 0.50 +0.0
737,240 + SM_b21094 0.50 +0.9
737,241 - SM_b21094 0.50 +1.1
737,301 + SM_b21094 0.54 +0.7
737,301 + SM_b21094 0.54 +0.2
737,302 - SM_b21094 0.54 +0.3
737,336 - SM_b21094 0.56 -0.4
737,468 - SM_b21094 0.65 -1.7
737,481 - SM_b21094 0.66 +0.1
737,680 - SM_b21094 0.80 -0.3
738,015 + -0.5
738,053 + +0.0
738,141 + SM_b21095 0.19 +0.1
738,141 + SM_b21095 0.19 +0.1
738,142 - SM_b21095 0.19 +0.1
738,142 - SM_b21095 0.19 +0.1
738,186 + SM_b21095 0.24 -0.6
738,187 - SM_b21095 0.25 +0.2
738,187 - SM_b21095 0.25 -0.9
738,300 + SM_b21095 0.37 -1.5
738,301 - SM_b21095 0.38 -0.2
738,302 + SM_b21095 0.38 -0.7
738,302 + SM_b21095 0.38 +0.9
738,303 - SM_b21095 0.38 -0.2
738,303 - SM_b21095 0.38 -0.4
738,303 - SM_b21095 0.38 -1.3
738,303 - SM_b21095 0.38 -0.3
738,303 - SM_b21095 0.38 -2.0
738,303 - -0.1
738,473 + SM_b21095 0.57 -0.1
738,473 + SM_b21095 0.57 -0.5
738,473 + SM_b21095 0.57 -0.6
738,474 - SM_b21095 0.57 +1.1
738,522 + SM_b21095 0.63 -0.9
738,679 + SM_b21095 0.81 +0.2
738,702 + SM_b21095 0.84 +0.8
738,702 + SM_b21095 0.84 -0.4
738,702 + SM_b21095 0.84 -0.3
738,702 + SM_b21095 0.84 -0.2
738,703 - SM_b21095 0.84 +0.7
738,703 - SM_b21095 0.84 +0.0
738,792 + +0.2
738,793 - +3.1
738,793 - -0.0
738,793 - +0.6
738,794 + -0.4
738,865 + -1.0
738,866 - +0.1
738,866 - -0.6
738,899 + +0.2
738,900 - +0.8

Or see this region's nucleotide sequence