Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21059

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21057 and SM_b21058 are separated by 52 nucleotidesSM_b21058 and SM_b21059 are separated by 23 nucleotidesSM_b21059 and SM_b21060 are separated by 4 nucleotides SM_b21057: SM_b21057 - hypothetical protein, at 691,767 to 692,645 _b21057 SM_b21058: SM_b21058 - glucose-1-phosphate cytidylyltransferase, at 692,698 to 692,919 _b21058 SM_b21059: SM_b21059 - glucose-1-phosphate cytidylyltransferase, at 692,943 to 693,467 _b21059 SM_b21060: SM_b21060 - sugar nucleotide epimerase dehydratase, at 693,472 to 694,521 _b21060 Position (kb) 692 693 694Strain fitness (log2 ratio) -1 0 1at 692.068 kb on + strand, within SM_b21057at 692.068 kb on + strand, within SM_b21057at 692.068 kb on + strand, within SM_b21057at 692.069 kb on - strand, within SM_b21057at 692.069 kb on - strand, within SM_b21057at 692.069 kb on - strand, within SM_b21057at 692.069 kb on - strand, within SM_b21057at 692.147 kb on + strand, within SM_b21057at 692.147 kb on + strand, within SM_b21057at 692.228 kb on + strand, within SM_b21057at 692.236 kb on + strand, within SM_b21057at 692.274 kb on + strand, within SM_b21057at 692.275 kb on - strand, within SM_b21057at 692.275 kb on - strand, within SM_b21057at 692.531 kb on + strand, within SM_b21057at 692.531 kb on + strand, within SM_b21057at 692.532 kb on - strand, within SM_b21057at 692.648 kb on + strandat 692.648 kb on + strandat 692.710 kb on - strandat 692.710 kb on - strandat 692.818 kb on + strand, within SM_b21058at 692.819 kb on - strand, within SM_b21058at 692.819 kb on - strand, within SM_b21058at 692.872 kb on + strand, within SM_b21058at 692.897 kb on - strandat 692.897 kb on - strandat 693.057 kb on - strand, within SM_b21059at 693.288 kb on + strand, within SM_b21059at 693.289 kb on - strand, within SM_b21059at 693.395 kb on + strand, within SM_b21059at 693.395 kb on + strand, within SM_b21059at 693.396 kb on - strand, within SM_b21059at 693.396 kb on - strand, within SM_b21059at 693.396 kb on - strand, within SM_b21059at 693.487 kb on - strandat 693.502 kb on + strandat 693.503 kb on - strandat 693.503 kb on - strandat 693.506 kb on + strandat 693.506 kb on + strandat 693.506 kb on + strandat 693.506 kb on + strandat 693.506 kb on + strandat 693.506 kb on + strandat 693.507 kb on - strandat 693.507 kb on - strandat 693.507 kb on - strandat 693.507 kb on - strandat 693.677 kb on + strand, within SM_b21060at 693.677 kb on + strand, within SM_b21060at 693.677 kb on + strand, within SM_b21060at 693.677 kb on + strand, within SM_b21060at 693.678 kb on - strand, within SM_b21060at 693.678 kb on - strand, within SM_b21060at 693.678 kb on - strand, within SM_b21060at 693.826 kb on + strand, within SM_b21060at 693.827 kb on - strand, within SM_b21060at 693.827 kb on - strand, within SM_b21060at 693.886 kb on + strand, within SM_b21060at 693.887 kb on - strand, within SM_b21060at 693.951 kb on + strand, within SM_b21060at 693.951 kb on + strand, within SM_b21060at 693.952 kb on - strand, within SM_b21060at 693.976 kb on + strand, within SM_b21060at 694.055 kb on - strand, within SM_b21060at 694.105 kb on - strand, within SM_b21060at 694.105 kb on - strand, within SM_b21060at 694.117 kb on + strand, within SM_b21060at 694.117 kb on + strand, within SM_b21060at 694.118 kb on - strand, within SM_b21060at 694.118 kb on - strand, within SM_b21060at 694.118 kb on - strand, within SM_b21060at 694.120 kb on - strand, within SM_b21060at 694.120 kb on - strand, within SM_b21060at 694.192 kb on + strand, within SM_b21060at 694.192 kb on + strand, within SM_b21060at 694.193 kb on - strand, within SM_b21060at 694.303 kb on + strand, within SM_b21060at 694.304 kb on - strand, within SM_b21060at 694.370 kb on - strand, within SM_b21060at 694.370 kb on - strand, within SM_b21060at 694.442 kb on + strandat 694.442 kb on + strandat 694.442 kb on + strandat 694.442 kb on + strandat 694.442 kb on + strandat 694.443 kb on - strandat 694.443 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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692,068 + SM_b21057 0.34 -0.1
692,068 + SM_b21057 0.34 -0.8
692,068 + SM_b21057 0.34 -0.5
692,069 - SM_b21057 0.34 +0.6
692,069 - SM_b21057 0.34 +0.4
692,069 - SM_b21057 0.34 +0.4
692,069 - SM_b21057 0.34 -0.5
692,147 + SM_b21057 0.43 -0.4
692,147 + SM_b21057 0.43 -0.4
692,228 + SM_b21057 0.52 +0.2
692,236 + SM_b21057 0.53 -0.4
692,274 + SM_b21057 0.58 -0.3
692,275 - SM_b21057 0.58 +0.0
692,275 - SM_b21057 0.58 -0.4
692,531 + SM_b21057 0.87 +0.1
692,531 + SM_b21057 0.87 +0.1
692,532 - SM_b21057 0.87 -0.6
692,648 + -0.2
692,648 + -0.5
692,710 - +0.2
692,710 - +0.0
692,818 + SM_b21058 0.54 -0.1
692,819 - SM_b21058 0.55 -0.1
692,819 - SM_b21058 0.55 +0.8
692,872 + SM_b21058 0.78 -0.9
692,897 - +0.7
692,897 - -0.6
693,057 - SM_b21059 0.22 +0.6
693,288 + SM_b21059 0.66 +0.5
693,289 - SM_b21059 0.66 +0.0
693,395 + SM_b21059 0.86 +0.1
693,395 + SM_b21059 0.86 -1.5
693,396 - SM_b21059 0.86 -0.2
693,396 - SM_b21059 0.86 -0.1
693,396 - SM_b21059 0.86 +0.0
693,487 - +0.5
693,502 + -0.5
693,503 - -0.0
693,503 - -0.5
693,506 + -0.8
693,506 + -0.0
693,506 + -1.5
693,506 + -1.6
693,506 + +0.8
693,506 + +0.7
693,507 - -0.5
693,507 - +0.5
693,507 - +0.1
693,507 - -0.8
693,677 + SM_b21060 0.20 -0.5
693,677 + SM_b21060 0.20 +0.1
693,677 + SM_b21060 0.20 -0.7
693,677 + SM_b21060 0.20 -1.3
693,678 - SM_b21060 0.20 +0.2
693,678 - SM_b21060 0.20 -0.2
693,678 - SM_b21060 0.20 +0.5
693,826 + SM_b21060 0.34 +0.4
693,827 - SM_b21060 0.34 -0.2
693,827 - SM_b21060 0.34 -1.0
693,886 + SM_b21060 0.39 +1.6
693,887 - SM_b21060 0.40 -1.1
693,951 + SM_b21060 0.46 -0.7
693,951 + SM_b21060 0.46 +0.1
693,952 - SM_b21060 0.46 +0.1
693,976 + SM_b21060 0.48 -0.0
694,055 - SM_b21060 0.56 -0.4
694,105 - SM_b21060 0.60 +0.2
694,105 - SM_b21060 0.60 +0.5
694,117 + SM_b21060 0.61 +0.3
694,117 + SM_b21060 0.61 -0.2
694,118 - SM_b21060 0.62 +0.7
694,118 - SM_b21060 0.62 -0.2
694,118 - SM_b21060 0.62 -1.5
694,120 - SM_b21060 0.62 +0.1
694,120 - SM_b21060 0.62 -0.2
694,192 + SM_b21060 0.69 -1.2
694,192 + SM_b21060 0.69 -0.6
694,193 - SM_b21060 0.69 -0.1
694,303 + SM_b21060 0.79 +1.2
694,304 - SM_b21060 0.79 +0.1
694,370 - SM_b21060 0.86 +0.1
694,370 - SM_b21060 0.86 +0.3
694,442 + -0.2
694,442 + +0.4
694,442 + -0.2
694,442 + +0.0
694,442 + +1.0
694,443 - -0.1
694,443 - +0.2

Or see this region's nucleotide sequence