Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20996 and SM_b20997 are separated by 85 nucleotides SM_b20997 and SM_b20998 are separated by 159 nucleotides SM_b20998 and SM_b20999 are separated by 9 nucleotides
SM_b20996: SM_b20996 - hypothetical protein, at 1,232,629 to 1,233,297
_b20996
SM_b20997: SM_b20997 - nitrate reductase, at 1,233,383 to 1,233,967
_b20997
SM_b20998: SM_b20998 - hypothetical protein, at 1,234,127 to 1,235,131
_b20998
SM_b20999: SM_b20999 - transporter, at 1,235,141 to 1,236,403
_b20999
Position (kb) 1234
1235
1236 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1233.345 kb on - strand at 1233.366 kb on - strand at 1233.366 kb on - strand at 1233.366 kb on - strand at 1233.385 kb on - strand at 1233.506 kb on + strand, within SM_b20997 at 1233.507 kb on - strand, within SM_b20997 at 1233.507 kb on - strand, within SM_b20997 at 1233.633 kb on - strand, within SM_b20997 at 1233.768 kb on + strand, within SM_b20997 at 1233.769 kb on - strand, within SM_b20997 at 1233.769 kb on - strand, within SM_b20997 at 1233.845 kb on - strand, within SM_b20997 at 1233.845 kb on - strand, within SM_b20997 at 1233.845 kb on - strand, within SM_b20997 at 1233.845 kb on - strand, within SM_b20997 at 1233.846 kb on + strand, within SM_b20997 at 1233.846 kb on + strand, within SM_b20997 at 1233.846 kb on + strand, within SM_b20997 at 1233.847 kb on - strand, within SM_b20997 at 1233.938 kb on + strand at 1233.959 kb on + strand at 1233.960 kb on - strand at 1233.999 kb on + strand at 1234.031 kb on - strand at 1234.037 kb on + strand at 1234.134 kb on + strand at 1234.314 kb on - strand, within SM_b20998 at 1234.314 kb on - strand, within SM_b20998 at 1234.365 kb on - strand, within SM_b20998 at 1234.661 kb on + strand, within SM_b20998 at 1234.662 kb on - strand, within SM_b20998 at 1234.662 kb on - strand, within SM_b20998 at 1234.662 kb on - strand, within SM_b20998 at 1234.662 kb on - strand, within SM_b20998 at 1234.715 kb on + strand, within SM_b20998 at 1234.716 kb on - strand, within SM_b20998 at 1234.716 kb on - strand, within SM_b20998 at 1234.716 kb on - strand, within SM_b20998 at 1234.835 kb on + strand, within SM_b20998 at 1234.835 kb on + strand, within SM_b20998 at 1234.836 kb on - strand, within SM_b20998 at 1234.924 kb on + strand, within SM_b20998 at 1234.924 kb on + strand, within SM_b20998 at 1234.940 kb on + strand, within SM_b20998 at 1234.940 kb on + strand, within SM_b20998 at 1234.941 kb on - strand, within SM_b20998 at 1235.069 kb on + strand at 1235.069 kb on + strand at 1235.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 1,233,345 - +0.5 1,233,366 - +0.3 1,233,366 - -2.2 1,233,366 - +0.4 1,233,385 - -1.0 1,233,506 + SM_b20997 0.21 +0.4 1,233,507 - SM_b20997 0.21 +0.9 1,233,507 - SM_b20997 0.21 -0.7 1,233,633 - SM_b20997 0.43 -0.2 1,233,768 + SM_b20997 0.66 -0.6 1,233,769 - SM_b20997 0.66 -0.3 1,233,769 - SM_b20997 0.66 -0.4 1,233,845 - SM_b20997 0.79 +0.4 1,233,845 - SM_b20997 0.79 -1.1 1,233,845 - SM_b20997 0.79 -0.5 1,233,845 - SM_b20997 0.79 +0.9 1,233,846 + SM_b20997 0.79 -0.3 1,233,846 + SM_b20997 0.79 +0.3 1,233,846 + SM_b20997 0.79 +0.4 1,233,847 - SM_b20997 0.79 +0.6 1,233,938 + -0.1 1,233,959 + +0.7 1,233,960 - -0.4 1,233,999 + +0.5 1,234,031 - -0.0 1,234,037 + +0.2 1,234,134 + +1.1 1,234,314 - SM_b20998 0.19 -1.0 1,234,314 - SM_b20998 0.19 -1.6 1,234,365 - SM_b20998 0.24 -1.2 1,234,661 + SM_b20998 0.53 -3.2 1,234,662 - SM_b20998 0.53 -2.5 1,234,662 - SM_b20998 0.53 -0.0 1,234,662 - SM_b20998 0.53 -3.3 1,234,662 - SM_b20998 0.53 -2.7 1,234,715 + SM_b20998 0.59 -0.7 1,234,716 - SM_b20998 0.59 +0.6 1,234,716 - SM_b20998 0.59 +1.8 1,234,716 - SM_b20998 0.59 -0.9 1,234,835 + SM_b20998 0.70 -2.6 1,234,835 + SM_b20998 0.70 -0.2 1,234,836 - SM_b20998 0.71 -1.0 1,234,924 + SM_b20998 0.79 -2.0 1,234,924 + SM_b20998 0.79 -1.5 1,234,940 + SM_b20998 0.81 -1.3 1,234,940 + SM_b20998 0.81 -1.0 1,234,941 - SM_b20998 0.81 -1.3 1,235,069 + -3.0 1,235,069 + -1.5 1,235,070 - -1.6
Or see this region's nucleotide sequence