Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20973

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20972 and SM_b20973 are separated by 106 nucleotidesSM_b20973 and SM_b20974 are separated by 13 nucleotidesSM_b20974 and SM_b20975 are separated by 25 nucleotides SM_b20972: SM_b20972 - sugar uptake ABC transporter ATP-binding protein, at 1,202,136 to 1,203,311 _b20972 SM_b20973: SM_b20973 - hypothetical protein, at 1,203,418 to 1,206,444 _b20973 SM_b20974: SM_b20974 - oxidoreductase, at 1,206,458 to 1,207,126 _b20974 SM_b20975: SM_b20975 - amino acid uptake ABC transporter permease, at 1,207,152 to 1,208,801 _b20975 Position (kb) 1203 1204 1205 1206 1207Strain fitness (log2 ratio) -2 -1 0 1 2at 1202.507 kb on + strand, within SM_b20972at 1202.530 kb on - strand, within SM_b20972at 1202.644 kb on + strand, within SM_b20972at 1202.644 kb on + strand, within SM_b20972at 1202.644 kb on + strand, within SM_b20972at 1202.645 kb on - strand, within SM_b20972at 1202.645 kb on - strand, within SM_b20972at 1202.645 kb on - strand, within SM_b20972at 1202.720 kb on + strand, within SM_b20972at 1202.720 kb on + strand, within SM_b20972at 1202.721 kb on - strand, within SM_b20972at 1202.721 kb on - strand, within SM_b20972at 1202.746 kb on + strand, within SM_b20972at 1202.747 kb on - strand, within SM_b20972at 1202.747 kb on - strand, within SM_b20972at 1202.747 kb on - strand, within SM_b20972at 1202.841 kb on + strand, within SM_b20972at 1202.841 kb on + strand, within SM_b20972at 1202.999 kb on + strand, within SM_b20972at 1203.000 kb on - strand, within SM_b20972at 1203.045 kb on - strand, within SM_b20972at 1203.061 kb on + strand, within SM_b20972at 1203.654 kb on - strandat 1203.678 kb on + strandat 1203.679 kb on - strandat 1203.825 kb on - strand, within SM_b20973at 1203.825 kb on - strand, within SM_b20973at 1203.919 kb on + strand, within SM_b20973at 1203.919 kb on + strand, within SM_b20973at 1203.919 kb on + strand, within SM_b20973at 1203.920 kb on - strand, within SM_b20973at 1203.920 kb on - strand, within SM_b20973at 1203.957 kb on + strand, within SM_b20973at 1203.957 kb on + strand, within SM_b20973at 1203.958 kb on - strand, within SM_b20973at 1203.958 kb on - strand, within SM_b20973at 1203.958 kb on - strand, within SM_b20973at 1204.024 kb on + strand, within SM_b20973at 1204.024 kb on + strand, within SM_b20973at 1204.025 kb on - strand, within SM_b20973at 1204.025 kb on - strand, within SM_b20973at 1204.034 kb on + strand, within SM_b20973at 1204.035 kb on - strand, within SM_b20973at 1204.035 kb on - strand, within SM_b20973at 1204.166 kb on + strand, within SM_b20973at 1204.166 kb on + strand, within SM_b20973at 1204.194 kb on - strand, within SM_b20973at 1204.212 kb on - strand, within SM_b20973at 1204.212 kb on - strand, within SM_b20973at 1204.278 kb on + strand, within SM_b20973at 1204.278 kb on + strand, within SM_b20973at 1204.278 kb on + strand, within SM_b20973at 1204.319 kb on + strand, within SM_b20973at 1204.319 kb on + strand, within SM_b20973at 1204.335 kb on + strand, within SM_b20973at 1204.463 kb on + strand, within SM_b20973at 1204.464 kb on - strand, within SM_b20973at 1204.616 kb on + strand, within SM_b20973at 1204.616 kb on + strand, within SM_b20973at 1204.617 kb on - strand, within SM_b20973at 1204.658 kb on + strand, within SM_b20973at 1204.659 kb on - strand, within SM_b20973at 1204.988 kb on + strand, within SM_b20973at 1204.989 kb on - strand, within SM_b20973at 1204.989 kb on - strand, within SM_b20973at 1204.989 kb on - strand, within SM_b20973at 1205.022 kb on + strand, within SM_b20973at 1205.023 kb on - strand, within SM_b20973at 1205.054 kb on + strand, within SM_b20973at 1205.169 kb on + strand, within SM_b20973at 1205.169 kb on + strand, within SM_b20973at 1205.169 kb on + strand, within SM_b20973at 1205.170 kb on - strand, within SM_b20973at 1205.170 kb on - strand, within SM_b20973at 1205.180 kb on + strand, within SM_b20973at 1205.181 kb on - strand, within SM_b20973at 1205.181 kb on - strand, within SM_b20973at 1205.195 kb on + strand, within SM_b20973at 1205.196 kb on - strand, within SM_b20973at 1205.217 kb on - strand, within SM_b20973at 1205.253 kb on + strand, within SM_b20973at 1205.253 kb on + strand, within SM_b20973at 1205.253 kb on + strand, within SM_b20973at 1205.253 kb on + strand, within SM_b20973at 1205.253 kb on + strand, within SM_b20973at 1205.253 kb on + strand, within SM_b20973at 1205.253 kb on + strand, within SM_b20973at 1205.253 kb on + strand, within SM_b20973at 1205.253 kb on + strand, within SM_b20973at 1205.253 kb on + strand, within SM_b20973at 1205.253 kb on + strand, within SM_b20973at 1205.254 kb on - strand, within SM_b20973at 1205.254 kb on - strand, within SM_b20973at 1205.254 kb on - strand, within SM_b20973at 1205.538 kb on - strand, within SM_b20973at 1205.538 kb on - strand, within SM_b20973at 1205.538 kb on - strand, within SM_b20973at 1205.594 kb on + strand, within SM_b20973at 1205.661 kb on - strand, within SM_b20973at 1205.764 kb on - strand, within SM_b20973at 1205.817 kb on + strand, within SM_b20973at 1205.818 kb on - strand, within SM_b20973at 1205.820 kb on - strand, within SM_b20973at 1205.835 kb on + strand, within SM_b20973at 1205.836 kb on - strand, within SM_b20973at 1205.974 kb on + strand, within SM_b20973at 1205.975 kb on - strand, within SM_b20973at 1205.975 kb on - strand, within SM_b20973at 1205.976 kb on + strand, within SM_b20973at 1205.977 kb on - strandat 1205.988 kb on - strand, within SM_b20973at 1206.377 kb on + strandat 1206.525 kb on - strandat 1206.525 kb on - strand, within SM_b20974at 1206.525 kb on - strand, within SM_b20974at 1206.587 kb on - strand, within SM_b20974at 1206.696 kb on + strand, within SM_b20974at 1206.696 kb on + strand, within SM_b20974at 1206.697 kb on - strand, within SM_b20974at 1206.702 kb on + strand, within SM_b20974at 1206.702 kb on + strand, within SM_b20974at 1206.702 kb on + strand, within SM_b20974at 1206.702 kb on + strand, within SM_b20974at 1206.703 kb on - strand, within SM_b20974at 1206.703 kb on - strand, within SM_b20974at 1206.703 kb on - strand, within SM_b20974at 1206.992 kb on + strand, within SM_b20974at 1207.074 kb on + strandat 1207.074 kb on + strandat 1207.075 kb on - strandat 1207.075 kb on - strandat 1207.075 kb on - strandat 1207.075 kb on - strandat 1207.075 kb on - strandat 1207.075 kb on - strandat 1207.171 kb on + strandat 1207.172 kb on - strandat 1207.182 kb on + strandat 1207.182 kb on + strandat 1207.183 kb on - strandat 1207.183 kb on - strandat 1207.183 kb on - strandat 1207.225 kb on + strandat 1207.225 kb on + strandat 1207.225 kb on + strandat 1207.244 kb on + strandat 1207.244 kb on + strandat 1207.244 kb on + strandat 1207.245 kb on - strandat 1207.247 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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1,202,507 + SM_b20972 0.32 +0.1
1,202,530 - SM_b20972 0.34 -0.6
1,202,644 + SM_b20972 0.43 +0.4
1,202,644 + SM_b20972 0.43 +0.2
1,202,644 + SM_b20972 0.43 +0.4
1,202,645 - SM_b20972 0.43 +0.2
1,202,645 - SM_b20972 0.43 -0.8
1,202,645 - SM_b20972 0.43 -0.7
1,202,720 + SM_b20972 0.50 -0.5
1,202,720 + SM_b20972 0.50 -0.3
1,202,721 - SM_b20972 0.50 -0.2
1,202,721 - SM_b20972 0.50 -0.5
1,202,746 + SM_b20972 0.52 -0.3
1,202,747 - SM_b20972 0.52 +0.1
1,202,747 - SM_b20972 0.52 +0.5
1,202,747 - SM_b20972 0.52 -0.4
1,202,841 + SM_b20972 0.60 -0.2
1,202,841 + SM_b20972 0.60 -0.3
1,202,999 + SM_b20972 0.73 -0.7
1,203,000 - SM_b20972 0.73 -2.5
1,203,045 - SM_b20972 0.77 +0.3
1,203,061 + SM_b20972 0.79 +1.7
1,203,654 - -1.4
1,203,678 + +0.0
1,203,679 - -0.8
1,203,825 - SM_b20973 0.13 -0.0
1,203,825 - SM_b20973 0.13 +0.9
1,203,919 + SM_b20973 0.17 +0.5
1,203,919 + SM_b20973 0.17 +0.1
1,203,919 + SM_b20973 0.17 +0.2
1,203,920 - SM_b20973 0.17 -0.1
1,203,920 - SM_b20973 0.17 -0.6
1,203,957 + SM_b20973 0.18 +0.4
1,203,957 + SM_b20973 0.18 +0.4
1,203,958 - SM_b20973 0.18 +0.2
1,203,958 - SM_b20973 0.18 +1.4
1,203,958 - SM_b20973 0.18 +0.3
1,204,024 + SM_b20973 0.20 +0.7
1,204,024 + SM_b20973 0.20 -0.3
1,204,025 - SM_b20973 0.20 +0.1
1,204,025 - SM_b20973 0.20 -0.5
1,204,034 + SM_b20973 0.20 +0.1
1,204,035 - SM_b20973 0.20 -0.6
1,204,035 - SM_b20973 0.20 +0.7
1,204,166 + SM_b20973 0.25 +0.2
1,204,166 + SM_b20973 0.25 +0.6
1,204,194 - SM_b20973 0.26 -0.2
1,204,212 - SM_b20973 0.26 +0.4
1,204,212 - SM_b20973 0.26 -0.1
1,204,278 + SM_b20973 0.28 +0.1
1,204,278 + SM_b20973 0.28 +0.1
1,204,278 + SM_b20973 0.28 -0.4
1,204,319 + SM_b20973 0.30 -0.9
1,204,319 + SM_b20973 0.30 -0.5
1,204,335 + SM_b20973 0.30 +0.0
1,204,463 + SM_b20973 0.35 -0.5
1,204,464 - SM_b20973 0.35 -1.2
1,204,616 + SM_b20973 0.40 -0.1
1,204,616 + SM_b20973 0.40 -0.5
1,204,617 - SM_b20973 0.40 +0.5
1,204,658 + SM_b20973 0.41 -0.2
1,204,659 - SM_b20973 0.41 +0.8
1,204,988 + SM_b20973 0.52 -0.1
1,204,989 - SM_b20973 0.52 +1.0
1,204,989 - SM_b20973 0.52 +0.3
1,204,989 - SM_b20973 0.52 -1.1
1,205,022 + SM_b20973 0.53 -1.9
1,205,023 - SM_b20973 0.53 +1.1
1,205,054 + SM_b20973 0.54 +1.7
1,205,169 + SM_b20973 0.58 +0.3
1,205,169 + SM_b20973 0.58 -1.3
1,205,169 + SM_b20973 0.58 +0.8
1,205,170 - SM_b20973 0.58 -0.2
1,205,170 - SM_b20973 0.58 +0.1
1,205,180 + SM_b20973 0.58 -1.3
1,205,181 - SM_b20973 0.58 +0.4
1,205,181 - SM_b20973 0.58 -0.0
1,205,195 + SM_b20973 0.59 -1.6
1,205,196 - SM_b20973 0.59 -0.1
1,205,217 - SM_b20973 0.59 +0.1
1,205,253 + SM_b20973 0.61 +0.5
1,205,253 + SM_b20973 0.61 +0.9
1,205,253 + SM_b20973 0.61 -0.2
1,205,253 + SM_b20973 0.61 +0.2
1,205,253 + SM_b20973 0.61 -0.1
1,205,253 + SM_b20973 0.61 +0.1
1,205,253 + SM_b20973 0.61 +0.4
1,205,253 + SM_b20973 0.61 -0.2
1,205,253 + SM_b20973 0.61 -0.0
1,205,253 + SM_b20973 0.61 +0.4
1,205,253 + SM_b20973 0.61 +0.2
1,205,254 - SM_b20973 0.61 -0.0
1,205,254 - SM_b20973 0.61 +0.5
1,205,254 - SM_b20973 0.61 +0.7
1,205,538 - SM_b20973 0.70 -0.1
1,205,538 - SM_b20973 0.70 -0.0
1,205,538 - SM_b20973 0.70 +0.3
1,205,594 + SM_b20973 0.72 -0.3
1,205,661 - SM_b20973 0.74 +0.2
1,205,764 - SM_b20973 0.78 +0.3
1,205,817 + SM_b20973 0.79 -0.0
1,205,818 - SM_b20973 0.79 -1.0
1,205,820 - SM_b20973 0.79 -0.0
1,205,835 + SM_b20973 0.80 +0.4
1,205,836 - SM_b20973 0.80 -0.5
1,205,974 + SM_b20973 0.84 +0.2
1,205,975 - SM_b20973 0.84 -0.2
1,205,975 - SM_b20973 0.84 +0.9
1,205,976 + SM_b20973 0.85 +0.2
1,205,977 - +0.3
1,205,988 - SM_b20973 0.85 +0.6
1,206,377 + +0.7
1,206,525 - +0.0
1,206,525 - SM_b20974 0.10 +0.2
1,206,525 - SM_b20974 0.10 -0.3
1,206,587 - SM_b20974 0.19 +0.7
1,206,696 + SM_b20974 0.36 +0.1
1,206,696 + SM_b20974 0.36 +0.7
1,206,697 - SM_b20974 0.36 +2.3
1,206,702 + SM_b20974 0.36 +0.2
1,206,702 + SM_b20974 0.36 +0.1
1,206,702 + SM_b20974 0.36 -0.3
1,206,702 + SM_b20974 0.36 +0.0
1,206,703 - SM_b20974 0.37 +0.2
1,206,703 - SM_b20974 0.37 -0.1
1,206,703 - SM_b20974 0.37 -0.1
1,206,992 + SM_b20974 0.80 -1.4
1,207,074 + -0.5
1,207,074 + +0.4
1,207,075 - +0.9
1,207,075 - -0.0
1,207,075 - +0.1
1,207,075 - -1.5
1,207,075 - +0.3
1,207,075 - -0.1
1,207,171 + -0.3
1,207,172 - +0.0
1,207,182 + -1.7
1,207,182 + -0.1
1,207,183 - +1.2
1,207,183 - -0.8
1,207,183 - -0.0
1,207,225 + -0.0
1,207,225 + -0.0
1,207,225 + -0.4
1,207,244 + +0.3
1,207,244 + +0.1
1,207,244 + -0.0
1,207,245 - -0.2
1,207,247 - +0.0

Or see this region's nucleotide sequence