Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20864 and SM_b20865 are separated by 63 nucleotides SM_b20865 and SM_b20866 are separated by 146 nucleotides SM_b20866 and SM_b20867 are separated by 55 nucleotides SM_b20867 and SM_b20868 are separated by 195 nucleotides
SM_b20864: SM_b20864 - hypothetical protein, at 1,269,410 to 1,269,835
_b20864
SM_b20865: SM_b20865 - hypothetical protein, at 1,269,899 to 1,270,651
_b20865
SM_b20866: SM_b20866 - hypothetical protein, at 1,270,798 to 1,271,715
_b20866
SM_b20867: SM_b20867 - hypothetical protein, at 1,271,771 to 1,272,121
_b20867
SM_b20868: SM_b20868 - two-component sensor histidine kinase, at 1,272,317 to 1,276,006
_b20868
Position (kb)
1270
1271
1272 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1269.877 kb on + strand at 1269.878 kb on - strand at 1269.901 kb on - strand at 1270.234 kb on + strand, within SM_b20865 at 1270.276 kb on + strand, within SM_b20865 at 1270.276 kb on + strand, within SM_b20865 at 1270.277 kb on - strand, within SM_b20865 at 1270.277 kb on - strand, within SM_b20865 at 1270.277 kb on - strand, within SM_b20865 at 1270.277 kb on - strand, within SM_b20865 at 1270.279 kb on - strand, within SM_b20865 at 1270.283 kb on + strand, within SM_b20865 at 1270.284 kb on - strand, within SM_b20865 at 1270.333 kb on - strand, within SM_b20865 at 1270.489 kb on + strand, within SM_b20865 at 1270.678 kb on - strand at 1270.678 kb on - strand at 1270.696 kb on + strand at 1270.802 kb on + strand at 1270.802 kb on + strand at 1270.803 kb on - strand at 1270.876 kb on - strand at 1271.073 kb on + strand, within SM_b20866 at 1271.150 kb on + strand, within SM_b20866 at 1271.347 kb on + strand, within SM_b20866 at 1271.348 kb on - strand, within SM_b20866 at 1271.348 kb on - strand, within SM_b20866 at 1271.348 kb on - strand, within SM_b20866 at 1271.419 kb on + strand, within SM_b20866 at 1271.599 kb on + strand, within SM_b20866 at 1271.600 kb on - strand, within SM_b20866 at 1271.652 kb on - strand at 1271.693 kb on + strand at 1271.693 kb on + strand at 1271.693 kb on + strand at 1271.694 kb on - strand at 1271.694 kb on - strand at 1271.694 kb on - strand at 1271.694 kb on - strand at 1271.694 kb on - strand at 1271.694 kb on - strand at 1271.694 kb on - strand at 1271.730 kb on + strand at 1271.731 kb on - strand at 1271.731 kb on - strand at 1271.772 kb on + strand at 1271.772 kb on + strand at 1271.773 kb on - strand at 1271.773 kb on - strand at 1271.773 kb on - strand at 1271.852 kb on + strand, within SM_b20867 at 1271.852 kb on + strand, within SM_b20867 at 1271.853 kb on - strand, within SM_b20867 at 1271.905 kb on + strand at 1271.905 kb on + strand, within SM_b20867 at 1271.905 kb on + strand, within SM_b20867 at 1271.906 kb on - strand, within SM_b20867 at 1271.906 kb on - strand, within SM_b20867 at 1271.911 kb on + strand, within SM_b20867 at 1271.911 kb on + strand, within SM_b20867 at 1271.911 kb on + strand, within SM_b20867 at 1271.911 kb on + strand, within SM_b20867 at 1271.912 kb on - strand, within SM_b20867 at 1271.912 kb on - strand, within SM_b20867 at 1271.912 kb on - strand, within SM_b20867 at 1271.912 kb on - strand, within SM_b20867 at 1271.912 kb on - strand, within SM_b20867 at 1271.980 kb on + strand, within SM_b20867 at 1271.981 kb on - strand, within SM_b20867 at 1271.981 kb on - strand, within SM_b20867 at 1272.121 kb on + strand at 1272.164 kb on + strand at 1272.225 kb on + strand at 1272.225 kb on + strand at 1272.287 kb on + strand at 1272.288 kb on - strand at 1272.372 kb on + strand at 1272.372 kb on + strand at 1272.373 kb on - strand at 1272.373 kb on - strand at 1272.373 kb on - strand at 1272.377 kb on + strand at 1272.377 kb on + strand at 1272.448 kb on + strand at 1272.582 kb on + strand at 1272.582 kb on + strand at 1272.582 kb on + strand at 1272.582 kb on + strand at 1272.582 kb on + strand at 1272.583 kb on - strand at 1272.583 kb on - strand at 1272.583 kb on - strand at 1272.584 kb on + strand at 1272.584 kb on + strand at 1272.584 kb on + strand at 1272.584 kb on + strand at 1272.584 kb on + strand at 1272.584 kb on + strand at 1272.584 kb on + strand at 1272.585 kb on - strand at 1272.585 kb on - strand at 1272.600 kb on + strand at 1272.600 kb on + strand at 1272.639 kb on + strand at 1272.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 1,269,877 + +0.4 1,269,878 - +0.1 1,269,901 - -0.5 1,270,234 + SM_b20865 0.44 -0.2 1,270,276 + SM_b20865 0.50 +0.4 1,270,276 + SM_b20865 0.50 +0.0 1,270,277 - SM_b20865 0.50 +0.3 1,270,277 - SM_b20865 0.50 -2.1 1,270,277 - SM_b20865 0.50 -0.5 1,270,277 - SM_b20865 0.50 -0.2 1,270,279 - SM_b20865 0.50 -0.2 1,270,283 + SM_b20865 0.51 -0.1 1,270,284 - SM_b20865 0.51 +0.1 1,270,333 - SM_b20865 0.58 -0.3 1,270,489 + SM_b20865 0.78 +0.4 1,270,678 - +0.1 1,270,678 - -1.1 1,270,696 + -3.2 1,270,802 + -0.9 1,270,802 + -0.4 1,270,803 - +0.2 1,270,876 - +0.6 1,271,073 + SM_b20866 0.30 +1.2 1,271,150 + SM_b20866 0.38 -0.2 1,271,347 + SM_b20866 0.60 +0.9 1,271,348 - SM_b20866 0.60 -0.8 1,271,348 - SM_b20866 0.60 +0.1 1,271,348 - SM_b20866 0.60 +1.7 1,271,419 + SM_b20866 0.68 +0.2 1,271,599 + SM_b20866 0.87 +0.7 1,271,600 - SM_b20866 0.87 +3.1 1,271,652 - -0.0 1,271,693 + +0.5 1,271,693 + -0.3 1,271,693 + -0.1 1,271,694 - -0.0 1,271,694 - -0.2 1,271,694 - +0.0 1,271,694 - -0.8 1,271,694 - +0.2 1,271,694 - -0.4 1,271,694 - -0.2 1,271,730 + +0.4 1,271,731 - +0.8 1,271,731 - +0.8 1,271,772 + +0.5 1,271,772 + +0.4 1,271,773 - -0.4 1,271,773 - -1.4 1,271,773 - +0.2 1,271,852 + SM_b20867 0.23 -1.6 1,271,852 + SM_b20867 0.23 +0.3 1,271,853 - SM_b20867 0.23 -0.1 1,271,905 + +1.4 1,271,905 + SM_b20867 0.38 -0.1 1,271,905 + SM_b20867 0.38 +0.1 1,271,906 - SM_b20867 0.38 -0.5 1,271,906 - SM_b20867 0.38 +0.6 1,271,911 + SM_b20867 0.40 -0.5 1,271,911 + SM_b20867 0.40 +0.1 1,271,911 + SM_b20867 0.40 -1.6 1,271,911 + SM_b20867 0.40 +0.6 1,271,912 - SM_b20867 0.40 -0.9 1,271,912 - SM_b20867 0.40 +0.0 1,271,912 - SM_b20867 0.40 +0.3 1,271,912 - SM_b20867 0.40 +0.6 1,271,912 - SM_b20867 0.40 +0.1 1,271,980 + SM_b20867 0.60 +0.4 1,271,981 - SM_b20867 0.60 +0.2 1,271,981 - SM_b20867 0.60 +0.6 1,272,121 + +0.2 1,272,164 + +0.6 1,272,225 + -0.3 1,272,225 + +0.0 1,272,287 + -0.1 1,272,288 - -0.5 1,272,372 + +0.8 1,272,372 + +0.6 1,272,373 - -0.3 1,272,373 - +0.4 1,272,373 - +0.4 1,272,377 + +0.4 1,272,377 + +0.4 1,272,448 + +0.9 1,272,582 + -1.7 1,272,582 + +0.2 1,272,582 + +1.2 1,272,582 + +0.2 1,272,582 + -0.6 1,272,583 - -0.9 1,272,583 - +0.0 1,272,583 - +0.2 1,272,584 + -0.0 1,272,584 + -0.4 1,272,584 + +0.2 1,272,584 + +0.4 1,272,584 + -1.0 1,272,584 + +0.4 1,272,584 + +0.6 1,272,585 - -0.0 1,272,585 - +0.3 1,272,600 + +0.0 1,272,600 + +0.1 1,272,639 + -0.2 1,272,640 - -0.5
Or see this region's nucleotide sequence