Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20717 and SM_b20718 are separated by 266 nucleotides SM_b20718 and SM_b20719 are separated by 77 nucleotides
SM_b20717: SM_b20717 - LacI family transcriptional regulator, at 1,520,541 to 1,521,566
_b20717
SM_b20718: SM_b20718 - sugar uptake ABC transporter ATP-binding protein, at 1,521,833 to 1,523,359
_b20718
SM_b20719: SM_b20719 - sugar uptake ABC transporter permease, at 1,523,437 to 1,524,447
_b20719
Position (kb)
1521
1522
1523
1524 Strain fitness (log2 ratio)
-2
-1
0
1 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.981 kb on + strand, within SM_b20717 at 1520.981 kb on + strand, within SM_b20717 at 1520.983 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.326 kb on + strand, within SM_b20717 at 1521.326 kb on + strand, within SM_b20717 at 1521.327 kb on - strand, within SM_b20717 at 1521.418 kb on + strand, within SM_b20717 at 1521.527 kb on + strand at 1521.528 kb on - strand at 1521.590 kb on - strand at 1521.686 kb on + strand at 1521.701 kb on + strand at 1521.701 kb on + strand at 1521.701 kb on + strand at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.204 kb on + strand, within SM_b20718 at 1522.204 kb on + strand, within SM_b20718 at 1522.204 kb on + strand, within SM_b20718 at 1522.205 kb on - strand, within SM_b20718 at 1522.491 kb on + strand, within SM_b20718 at 1522.659 kb on - strand, within SM_b20718 at 1522.850 kb on + strand, within SM_b20718 at 1522.901 kb on + strand, within SM_b20718 at 1522.949 kb on + strand, within SM_b20718 at 1523.159 kb on + strand, within SM_b20718 at 1523.160 kb on - strand, within SM_b20718 at 1523.160 kb on - strand, within SM_b20718 at 1523.160 kb on - strand, within SM_b20718 at 1523.879 kb on - strand, within SM_b20719 at 1523.879 kb on - strand, within SM_b20719 at 1523.939 kb on + strand, within SM_b20719 at 1523.962 kb on + strand, within SM_b20719 at 1523.963 kb on - strand, within SM_b20719 at 1524.101 kb on - strand, within SM_b20719 at 1524.181 kb on + strand, within SM_b20719 at 1524.181 kb on + strand, within SM_b20719
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 1,520,922 - SM_b20717 0.37 -1.9 1,520,922 - SM_b20717 0.37 +0.1 1,520,922 - SM_b20717 0.37 -0.8 1,520,922 - SM_b20717 0.37 -0.2 1,520,922 - SM_b20717 0.37 +0.5 1,520,922 - SM_b20717 0.37 +0.2 1,520,981 + SM_b20717 0.43 -1.4 1,520,981 + SM_b20717 0.43 +0.2 1,520,983 + SM_b20717 0.43 -0.4 1,521,091 + SM_b20717 0.54 -0.7 1,521,091 + SM_b20717 0.54 -1.1 1,521,091 + SM_b20717 0.54 +0.9 1,521,091 + SM_b20717 0.54 +0.5 1,521,091 + SM_b20717 0.54 -0.6 1,521,092 - SM_b20717 0.54 -0.6 1,521,092 - SM_b20717 0.54 +0.0 1,521,092 - SM_b20717 0.54 +1.0 1,521,092 - SM_b20717 0.54 -0.2 1,521,092 - SM_b20717 0.54 +0.6 1,521,326 + SM_b20717 0.77 +0.5 1,521,326 + SM_b20717 0.77 -0.0 1,521,327 - SM_b20717 0.77 +0.4 1,521,418 + SM_b20717 0.85 +1.4 1,521,527 + -0.0 1,521,528 - -0.3 1,521,590 - +0.5 1,521,686 + -0.2 1,521,701 + +0.1 1,521,701 + -0.8 1,521,701 + -0.5 1,522,202 + SM_b20718 0.24 -1.5 1,522,202 + SM_b20718 0.24 -0.3 1,522,202 + SM_b20718 0.24 +0.1 1,522,202 + SM_b20718 0.24 +0.5 1,522,202 + SM_b20718 0.24 +0.1 1,522,203 - SM_b20718 0.24 -1.2 1,522,203 - SM_b20718 0.24 -2.2 1,522,203 - SM_b20718 0.24 +1.1 1,522,203 - SM_b20718 0.24 +0.2 1,522,204 + SM_b20718 0.24 -0.1 1,522,204 + SM_b20718 0.24 -0.7 1,522,204 + SM_b20718 0.24 -0.5 1,522,205 - SM_b20718 0.24 +0.6 1,522,491 + SM_b20718 0.43 -1.9 1,522,659 - SM_b20718 0.54 -1.9 1,522,850 + SM_b20718 0.67 +0.2 1,522,901 + SM_b20718 0.70 +0.0 1,522,949 + SM_b20718 0.73 -0.1 1,523,159 + SM_b20718 0.87 -0.4 1,523,160 - SM_b20718 0.87 +0.6 1,523,160 - SM_b20718 0.87 -0.4 1,523,160 - SM_b20718 0.87 -1.0 1,523,879 - SM_b20719 0.44 -0.0 1,523,879 - SM_b20719 0.44 +0.2 1,523,939 + SM_b20719 0.50 -1.7 1,523,962 + SM_b20719 0.52 +0.2 1,523,963 - SM_b20719 0.52 +0.3 1,524,101 - SM_b20719 0.66 +0.2 1,524,181 + SM_b20719 0.74 +0.6 1,524,181 + SM_b20719 0.74 +0.5
Or see this region's nucleotide sequence