Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20674 and SM_b20675 are separated by 32 nucleotides SM_b20675 and SM_b20676 are separated by 25 nucleotides SM_b20676 and SM_b20677 are separated by 98 nucleotides SM_b20677 and SM_b20678 are separated by 47 nucleotides
SM_b20674: SM_b20674 - LacI family transcriptional regulator, at 1,476,114 to 1,477,133
_b20674
SM_b20675: SM_b20675 - hypothetical protein, at 1,477,166 to 1,477,741
_b20675
SM_b20676: SM_b20676 - hypothetical protein, at 1,477,767 to 1,478,687
_b20676
SM_b20677: SM_b20677 - ureidoglycolate hydrolase, at 1,478,786 to 1,479,277
_b20677
SM_b20678: SM_b20678 - hydroxypyruvate reductase, at 1,479,325 to 1,480,593
_b20678
Position (kb)
1477
1478
1479 Strain fitness (log2 ratio)
-2
-1
0
1 at 1476.777 kb on + strand, within SM_b20674 at 1477.079 kb on - strand at 1477.427 kb on + strand, within SM_b20675 at 1477.428 kb on - strand, within SM_b20675 at 1477.473 kb on + strand, within SM_b20675 at 1477.536 kb on + strand, within SM_b20675 at 1477.537 kb on - strand, within SM_b20675 at 1477.537 kb on - strand, within SM_b20675 at 1477.537 kb on - strand, within SM_b20675 at 1477.537 kb on - strand, within SM_b20675 at 1477.602 kb on + strand, within SM_b20675 at 1477.602 kb on + strand, within SM_b20675 at 1477.602 kb on + strand, within SM_b20675 at 1477.603 kb on - strand, within SM_b20675 at 1477.603 kb on - strand, within SM_b20675 at 1477.632 kb on + strand, within SM_b20675 at 1477.633 kb on - strand, within SM_b20675 at 1477.658 kb on - strand, within SM_b20675 at 1477.888 kb on + strand, within SM_b20676 at 1477.888 kb on + strand, within SM_b20676 at 1477.888 kb on + strand, within SM_b20676 at 1477.889 kb on - strand, within SM_b20676 at 1477.889 kb on - strand, within SM_b20676 at 1477.889 kb on - strand, within SM_b20676 at 1478.043 kb on + strand, within SM_b20676 at 1478.044 kb on - strand, within SM_b20676 at 1478.339 kb on + strand, within SM_b20676 at 1478.744 kb on - strand at 1478.793 kb on + strand at 1478.794 kb on - strand at 1478.794 kb on - strand at 1478.806 kb on - strand at 1478.806 kb on - strand at 1478.836 kb on + strand, within SM_b20677 at 1478.836 kb on + strand, within SM_b20677 at 1478.836 kb on + strand, within SM_b20677 at 1478.836 kb on + strand, within SM_b20677 at 1478.837 kb on - strand, within SM_b20677 at 1478.837 kb on - strand, within SM_b20677 at 1479.087 kb on + strand, within SM_b20677 at 1479.087 kb on + strand, within SM_b20677 at 1479.088 kb on - strand, within SM_b20677 at 1479.272 kb on + strand at 1479.273 kb on - strand at 1479.273 kb on - strand at 1479.480 kb on + strand, within SM_b20678 at 1479.568 kb on + strand, within SM_b20678
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 1,476,777 + SM_b20674 0.65 -0.2 1,477,079 - +0.1 1,477,427 + SM_b20675 0.45 -1.1 1,477,428 - SM_b20675 0.45 -0.5 1,477,473 + SM_b20675 0.53 +0.2 1,477,536 + SM_b20675 0.64 -0.5 1,477,537 - SM_b20675 0.64 +0.1 1,477,537 - SM_b20675 0.64 -0.2 1,477,537 - SM_b20675 0.64 +0.1 1,477,537 - SM_b20675 0.64 +0.0 1,477,602 + SM_b20675 0.76 -0.3 1,477,602 + SM_b20675 0.76 -0.8 1,477,602 + SM_b20675 0.76 +0.4 1,477,603 - SM_b20675 0.76 -0.2 1,477,603 - SM_b20675 0.76 +0.1 1,477,632 + SM_b20675 0.81 -0.4 1,477,633 - SM_b20675 0.81 +0.7 1,477,658 - SM_b20675 0.85 -0.2 1,477,888 + SM_b20676 0.13 -1.8 1,477,888 + SM_b20676 0.13 +0.1 1,477,888 + SM_b20676 0.13 -1.3 1,477,889 - SM_b20676 0.13 -0.4 1,477,889 - SM_b20676 0.13 -1.6 1,477,889 - SM_b20676 0.13 -1.7 1,478,043 + SM_b20676 0.30 -1.3 1,478,044 - SM_b20676 0.30 -1.5 1,478,339 + SM_b20676 0.62 -2.3 1,478,744 - +0.4 1,478,793 + -0.7 1,478,794 - -0.4 1,478,794 - -0.7 1,478,806 - +0.1 1,478,806 - +1.4 1,478,836 + SM_b20677 0.10 -0.3 1,478,836 + SM_b20677 0.10 +0.1 1,478,836 + SM_b20677 0.10 +1.1 1,478,836 + SM_b20677 0.10 -0.2 1,478,837 - SM_b20677 0.10 +0.1 1,478,837 - SM_b20677 0.10 +0.5 1,479,087 + SM_b20677 0.61 +0.2 1,479,087 + SM_b20677 0.61 -0.5 1,479,088 - SM_b20677 0.61 +0.3 1,479,272 + -1.1 1,479,273 - -0.9 1,479,273 - -1.3 1,479,480 + SM_b20678 0.12 -0.4 1,479,568 + SM_b20678 0.19 -0.6
Or see this region's nucleotide sequence