Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20656 and SM_b20657 are separated by 38 nucleotides SM_b20657 and SM_b20658 are separated by 7 nucleotides SM_b20658 and SM_b20659 are separated by 14 nucleotides
SM_b20656: SM_b20656 - oxidoreductase, at 1,457,321 to 1,458,190
_b20656
SM_b20657: SM_b20657 - hypothetical protein, at 1,458,229 to 1,458,885
_b20657
SM_b20658: SM_b20658 - sugar uptake ABC transporter permease, at 1,458,893 to 1,459,792
_b20658
SM_b20659: SM_b20659 - sugar uptake ABC transporter permease, at 1,459,807 to 1,460,739
_b20659
Position (kb)
1458
1459
1460 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1458.105 kb on + strand at 1458.173 kb on + strand at 1458.174 kb on - strand at 1458.247 kb on + strand at 1458.466 kb on + strand, within SM_b20657 at 1458.477 kb on + strand, within SM_b20657 at 1458.477 kb on + strand, within SM_b20657 at 1458.478 kb on - strand, within SM_b20657 at 1458.927 kb on + strand at 1458.927 kb on + strand at 1458.928 kb on - strand at 1458.928 kb on - strand at 1458.928 kb on - strand at 1458.928 kb on - strand at 1458.930 kb on + strand at 1458.931 kb on - strand at 1458.931 kb on - strand at 1458.948 kb on + strand at 1458.949 kb on - strand at 1458.949 kb on - strand at 1459.089 kb on + strand, within SM_b20658 at 1459.245 kb on + strand, within SM_b20658 at 1459.246 kb on - strand, within SM_b20658 at 1459.275 kb on - strand, within SM_b20658 at 1459.291 kb on - strand, within SM_b20658 at 1459.320 kb on + strand, within SM_b20658 at 1459.383 kb on + strand, within SM_b20658 at 1459.446 kb on + strand, within SM_b20658 at 1459.447 kb on - strand, within SM_b20658 at 1459.447 kb on - strand, within SM_b20658 at 1459.447 kb on - strand, within SM_b20658 at 1459.490 kb on + strand, within SM_b20658 at 1459.527 kb on + strand, within SM_b20658 at 1459.528 kb on - strand, within SM_b20658 at 1459.548 kb on + strand, within SM_b20658 at 1459.548 kb on + strand, within SM_b20658 at 1459.548 kb on + strand, within SM_b20658 at 1459.592 kb on - strand, within SM_b20658 at 1459.593 kb on + strand, within SM_b20658 at 1459.593 kb on + strand, within SM_b20658 at 1459.594 kb on - strand, within SM_b20658 at 1459.594 kb on - strand, within SM_b20658 at 1459.594 kb on - strand, within SM_b20658 at 1459.603 kb on - strand, within SM_b20658 at 1459.650 kb on + strand, within SM_b20658 at 1459.667 kb on + strand, within SM_b20658 at 1459.668 kb on - strand, within SM_b20658 at 1459.668 kb on - strand, within SM_b20658 at 1459.695 kb on + strand, within SM_b20658 at 1459.696 kb on - strand, within SM_b20658 at 1459.696 kb on - strand, within SM_b20658 at 1459.696 kb on - strand, within SM_b20658 at 1459.731 kb on + strand at 1459.732 kb on - strand at 1459.732 kb on - strand at 1460.004 kb on - strand, within SM_b20659 at 1460.004 kb on - strand, within SM_b20659 at 1460.004 kb on - strand, within SM_b20659 at 1460.090 kb on + strand, within SM_b20659 at 1460.475 kb on - strand, within SM_b20659 at 1460.480 kb on + strand, within SM_b20659 at 1460.481 kb on - strand, within SM_b20659 at 1460.495 kb on + strand, within SM_b20659 at 1460.496 kb on - strand, within SM_b20659 at 1460.728 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 1,458,105 + -0.3 1,458,173 + -0.9 1,458,174 - +0.3 1,458,247 + +0.9 1,458,466 + SM_b20657 0.36 -0.3 1,458,477 + SM_b20657 0.38 -0.3 1,458,477 + SM_b20657 0.38 -0.2 1,458,478 - SM_b20657 0.38 +0.0 1,458,927 + +0.6 1,458,927 + -0.4 1,458,928 - +0.1 1,458,928 - +0.4 1,458,928 - +0.3 1,458,928 - +0.2 1,458,930 + -0.1 1,458,931 - +1.4 1,458,931 - -0.0 1,458,948 + -0.1 1,458,949 - -0.1 1,458,949 - +0.9 1,459,089 + SM_b20658 0.22 +2.0 1,459,245 + SM_b20658 0.39 +0.5 1,459,246 - SM_b20658 0.39 +0.8 1,459,275 - SM_b20658 0.42 +0.2 1,459,291 - SM_b20658 0.44 +0.1 1,459,320 + SM_b20658 0.47 -0.7 1,459,383 + SM_b20658 0.54 +0.5 1,459,446 + SM_b20658 0.61 +0.4 1,459,447 - SM_b20658 0.62 -0.3 1,459,447 - SM_b20658 0.62 -0.2 1,459,447 - SM_b20658 0.62 +0.1 1,459,490 + SM_b20658 0.66 +0.4 1,459,527 + SM_b20658 0.70 +0.0 1,459,528 - SM_b20658 0.71 -0.1 1,459,548 + SM_b20658 0.73 -0.3 1,459,548 + SM_b20658 0.73 +0.6 1,459,548 + SM_b20658 0.73 +0.2 1,459,592 - SM_b20658 0.78 +0.0 1,459,593 + SM_b20658 0.78 +0.8 1,459,593 + SM_b20658 0.78 -0.3 1,459,594 - SM_b20658 0.78 +0.5 1,459,594 - SM_b20658 0.78 +0.4 1,459,594 - SM_b20658 0.78 -1.6 1,459,603 - SM_b20658 0.79 +0.9 1,459,650 + SM_b20658 0.84 +0.8 1,459,667 + SM_b20658 0.86 +0.1 1,459,668 - SM_b20658 0.86 -0.1 1,459,668 - SM_b20658 0.86 +0.5 1,459,695 + SM_b20658 0.89 +0.1 1,459,696 - SM_b20658 0.89 -0.2 1,459,696 - SM_b20658 0.89 -0.9 1,459,696 - SM_b20658 0.89 +0.7 1,459,731 + +0.6 1,459,732 - -1.0 1,459,732 - +0.5 1,460,004 - SM_b20659 0.21 -1.1 1,460,004 - SM_b20659 0.21 -0.8 1,460,004 - SM_b20659 0.21 +0.3 1,460,090 + SM_b20659 0.30 +0.6 1,460,475 - SM_b20659 0.72 -0.5 1,460,480 + SM_b20659 0.72 -0.0 1,460,481 - SM_b20659 0.72 -2.2 1,460,495 + SM_b20659 0.74 +0.0 1,460,496 - SM_b20659 0.74 -0.3 1,460,728 + -0.2
Or see this region's nucleotide sequence