Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20611 and SM_b20612 are separated by 231 nucleotides SM_b20612 and SM_b20613 are separated by 3 nucleotides
SM_b20611: SM_b20611 - C4-dicarboxylate transporter DctA, at 1,626,577 to 1,627,902
_b20611
SM_b20612: SM_b20612 - C4-dicarboxylate transport sensor protein, at 1,628,134 to 1,629,999
_b20612
SM_b20613: SM_b20613 - C4-dicarboxylate transport transcriptional regulator, at 1,630,003 to 1,631,385
_b20613
Position (kb)
1628
1629
1630 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1627.142 kb on + strand, within SM_b20611 at 1627.142 kb on + strand, within SM_b20611 at 1627.194 kb on - strand, within SM_b20611 at 1627.241 kb on + strand, within SM_b20611 at 1627.241 kb on + strand, within SM_b20611 at 1627.242 kb on - strand, within SM_b20611 at 1627.242 kb on - strand, within SM_b20611 at 1627.242 kb on - strand, within SM_b20611 at 1627.242 kb on - strand, within SM_b20611 at 1627.242 kb on - strand, within SM_b20611 at 1627.242 kb on - strand, within SM_b20611 at 1627.515 kb on - strand, within SM_b20611 at 1627.555 kb on - strand, within SM_b20611 at 1627.634 kb on + strand, within SM_b20611 at 1627.635 kb on - strand, within SM_b20611 at 1627.793 kb on + strand at 1627.844 kb on + strand at 1627.845 kb on - strand at 1627.845 kb on - strand at 1627.856 kb on + strand at 1627.906 kb on - strand at 1628.261 kb on + strand at 1628.578 kb on + strand, within SM_b20612 at 1628.579 kb on - strand, within SM_b20612 at 1628.670 kb on + strand, within SM_b20612 at 1628.671 kb on - strand, within SM_b20612 at 1628.671 kb on - strand, within SM_b20612 at 1628.776 kb on + strand, within SM_b20612 at 1628.776 kb on + strand, within SM_b20612 at 1628.776 kb on + strand, within SM_b20612 at 1628.777 kb on - strand, within SM_b20612 at 1629.161 kb on + strand, within SM_b20612 at 1629.161 kb on + strand, within SM_b20612 at 1629.161 kb on + strand, within SM_b20612 at 1629.161 kb on + strand, within SM_b20612 at 1629.162 kb on - strand, within SM_b20612 at 1629.162 kb on - strand, within SM_b20612 at 1629.165 kb on - strand, within SM_b20612 at 1629.165 kb on - strand, within SM_b20612 at 1629.413 kb on - strand, within SM_b20612 at 1629.421 kb on - strand, within SM_b20612 at 1629.928 kb on + strand at 1629.929 kb on - strand at 1630.249 kb on - strand, within SM_b20613 at 1630.300 kb on + strand, within SM_b20613 at 1630.300 kb on + strand, within SM_b20613 at 1630.300 kb on + strand, within SM_b20613 at 1630.301 kb on - strand, within SM_b20613 at 1630.301 kb on - strand, within SM_b20613 at 1630.909 kb on + strand, within SM_b20613 at 1630.909 kb on + strand, within SM_b20613 at 1630.910 kb on - strand, within SM_b20613 at 1630.912 kb on + strand, within SM_b20613
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 1,627,142 + SM_b20611 0.43 +0.4 1,627,142 + SM_b20611 0.43 +0.8 1,627,194 - SM_b20611 0.47 +1.6 1,627,241 + SM_b20611 0.50 +0.8 1,627,241 + SM_b20611 0.50 +0.6 1,627,242 - SM_b20611 0.50 +0.2 1,627,242 - SM_b20611 0.50 +0.5 1,627,242 - SM_b20611 0.50 +1.4 1,627,242 - SM_b20611 0.50 +0.5 1,627,242 - SM_b20611 0.50 -0.2 1,627,242 - SM_b20611 0.50 +0.8 1,627,515 - SM_b20611 0.71 +0.5 1,627,555 - SM_b20611 0.74 +0.5 1,627,634 + SM_b20611 0.80 +0.6 1,627,635 - SM_b20611 0.80 +0.9 1,627,793 + +0.4 1,627,844 + +0.8 1,627,845 - +0.8 1,627,845 - +0.7 1,627,856 + -0.0 1,627,906 - +0.2 1,628,261 + -0.1 1,628,578 + SM_b20612 0.24 -0.8 1,628,579 - SM_b20612 0.24 +0.9 1,628,670 + SM_b20612 0.29 +1.7 1,628,671 - SM_b20612 0.29 +1.3 1,628,671 - SM_b20612 0.29 +0.9 1,628,776 + SM_b20612 0.34 +1.0 1,628,776 + SM_b20612 0.34 +0.3 1,628,776 + SM_b20612 0.34 +0.8 1,628,777 - SM_b20612 0.34 +0.4 1,629,161 + SM_b20612 0.55 +0.7 1,629,161 + SM_b20612 0.55 +1.6 1,629,161 + SM_b20612 0.55 +0.6 1,629,161 + SM_b20612 0.55 +0.3 1,629,162 - SM_b20612 0.55 +0.0 1,629,162 - SM_b20612 0.55 +0.3 1,629,165 - SM_b20612 0.55 +0.7 1,629,165 - SM_b20612 0.55 -0.8 1,629,413 - SM_b20612 0.69 -0.5 1,629,421 - SM_b20612 0.69 -0.1 1,629,928 + +0.2 1,629,929 - +0.4 1,630,249 - SM_b20613 0.18 +1.0 1,630,300 + SM_b20613 0.21 +2.8 1,630,300 + SM_b20613 0.21 +0.8 1,630,300 + SM_b20613 0.21 +1.6 1,630,301 - SM_b20613 0.22 +1.8 1,630,301 - SM_b20613 0.22 +1.1 1,630,909 + SM_b20613 0.66 +1.2 1,630,909 + SM_b20613 0.66 +0.6 1,630,910 - SM_b20613 0.66 +0.8 1,630,912 + SM_b20613 0.66 +1.0
Or see this region's nucleotide sequence