Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20562 and SM_b20563 are separated by 114 nucleotides SM_b20563 and SM_b20803 are separated by 230 nucleotides
SM_b20562: SM_b20562 - hypothetical protein, at 586,186 to 587,100
_b20562
SM_b20563: SM_b20563 - hypothetical protein, at 587,215 to 588,129
_b20563
SM_b20803: SM_b20803 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 588,360 to 589,190
_b20803
Position (kb) 587
588
589 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 586.250 kb on + strand at 586.251 kb on - strand at 586.256 kb on + strand at 586.256 kb on + strand at 586.257 kb on - strand at 586.257 kb on - strand at 586.372 kb on - strand, within SM_b20562 at 586.372 kb on - strand, within SM_b20562 at 586.457 kb on + strand, within SM_b20562 at 586.457 kb on + strand, within SM_b20562 at 586.457 kb on + strand, within SM_b20562 at 586.458 kb on - strand, within SM_b20562 at 586.458 kb on - strand, within SM_b20562 at 586.612 kb on + strand, within SM_b20562 at 586.612 kb on + strand, within SM_b20562 at 586.612 kb on + strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.637 kb on + strand, within SM_b20562 at 586.638 kb on - strand, within SM_b20562 at 586.643 kb on + strand, within SM_b20562 at 586.644 kb on - strand, within SM_b20562 at 586.722 kb on + strand, within SM_b20562 at 586.759 kb on + strand, within SM_b20562 at 586.778 kb on + strand, within SM_b20562 at 586.779 kb on - strand, within SM_b20562 at 586.838 kb on + strand, within SM_b20562 at 586.838 kb on + strand, within SM_b20562 at 586.838 kb on + strand, within SM_b20562 at 586.839 kb on - strand, within SM_b20562 at 586.839 kb on - strand, within SM_b20562 at 586.881 kb on + strand, within SM_b20562 at 586.882 kb on - strand, within SM_b20562 at 586.889 kb on + strand, within SM_b20562 at 586.942 kb on + strand, within SM_b20562 at 586.943 kb on - strand, within SM_b20562 at 587.073 kb on + strand at 587.074 kb on - strand at 587.213 kb on + strand at 587.213 kb on + strand at 587.668 kb on - strand, within SM_b20563 at 587.668 kb on - strand, within SM_b20563 at 587.784 kb on - strand, within SM_b20563 at 588.011 kb on + strand, within SM_b20563 at 588.100 kb on - strand at 588.100 kb on - strand at 588.131 kb on + strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.147 kb on + strand at 588.222 kb on + strand at 588.259 kb on - strand at 588.269 kb on + strand at 588.272 kb on - strand at 588.272 kb on - strand at 588.308 kb on + strand at 588.433 kb on - strand at 588.451 kb on + strand, within SM_b20803 at 588.606 kb on - strand, within SM_b20803 at 588.606 kb on - strand, within SM_b20803 at 588.817 kb on + strand, within SM_b20803 at 588.817 kb on + strand, within SM_b20803 at 588.818 kb on - strand, within SM_b20803 at 588.978 kb on - strand, within SM_b20803 at 589.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 586,250 + -1.9 586,251 - +0.6 586,256 + -0.4 586,256 + -0.1 586,257 - -0.2 586,257 - -1.2 586,372 - SM_b20562 0.20 +0.3 586,372 - SM_b20562 0.20 +0.3 586,457 + SM_b20562 0.30 +0.5 586,457 + SM_b20562 0.30 -1.2 586,457 + SM_b20562 0.30 -0.1 586,458 - SM_b20562 0.30 -0.5 586,458 - SM_b20562 0.30 -1.4 586,612 + SM_b20562 0.47 +0.2 586,612 + SM_b20562 0.47 +0.6 586,612 + SM_b20562 0.47 +0.5 586,613 - SM_b20562 0.47 +0.1 586,613 - SM_b20562 0.47 +0.2 586,613 - SM_b20562 0.47 +0.3 586,613 - SM_b20562 0.47 +0.4 586,637 + SM_b20562 0.49 +0.5 586,638 - SM_b20562 0.49 +0.7 586,643 + SM_b20562 0.50 -0.4 586,644 - SM_b20562 0.50 +0.7 586,722 + SM_b20562 0.59 -1.3 586,759 + SM_b20562 0.63 -0.1 586,778 + SM_b20562 0.65 +0.8 586,779 - SM_b20562 0.65 +0.6 586,838 + SM_b20562 0.71 +1.0 586,838 + SM_b20562 0.71 +0.2 586,838 + SM_b20562 0.71 -0.0 586,839 - SM_b20562 0.71 +0.4 586,839 - SM_b20562 0.71 -0.7 586,881 + SM_b20562 0.76 +0.0 586,882 - SM_b20562 0.76 -0.2 586,889 + SM_b20562 0.77 +0.5 586,942 + SM_b20562 0.83 +0.2 586,943 - SM_b20562 0.83 +1.3 587,073 + -0.3 587,074 - +0.1 587,213 + +0.6 587,213 + -0.2 587,668 - SM_b20563 0.50 -4.8 587,668 - SM_b20563 0.50 -2.4 587,784 - SM_b20563 0.62 -3.4 588,011 + SM_b20563 0.87 -2.4 588,100 - -1.4 588,100 - -3.3 588,131 + -2.5 588,132 - -0.6 588,132 - -1.0 588,132 - -0.8 588,132 - -0.4 588,147 + -3.5 588,222 + -2.2 588,259 - -0.3 588,269 + -1.9 588,272 - -1.4 588,272 - +0.4 588,308 + -0.5 588,433 - -0.4 588,451 + SM_b20803 0.11 -0.8 588,606 - SM_b20803 0.30 -0.6 588,606 - SM_b20803 0.30 -1.0 588,817 + SM_b20803 0.55 -0.1 588,817 + SM_b20803 0.55 -3.1 588,818 - SM_b20803 0.55 -1.9 588,978 - SM_b20803 0.74 -0.8 589,109 - -0.8
Or see this region's nucleotide sequence