Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20453 and SM_b20454 are separated by 280 nucleotides SM_b20454 and SM_b20455 are separated by 104 nucleotides SM_b20455 and SM_b20456 are separated by 104 nucleotides SM_b20456 and SM_b20457 are separated by 80 nucleotides
SM_b20453: SM_b20453 - gluconolactonase, at 465,642 to 466,553
_b20453
SM_b20454: SM_b20454 - hypothetical protein, at 466,834 to 467,253
_b20454
SM_b20455: SM_b20455 - transcriptional regulator, at 467,358 to 467,972
_b20455
SM_b20456: SM_b20456 - dehydrogenasereductase, at 468,077 to 468,823
_b20456
SM_b20457: SM_b20457 - transcriptional regulator transcription regulator protein, at 468,904 to 470,052
_b20457
Position (kb) 467
468 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 466.403 kb on + strand, within SM_b20453 at 466.471 kb on + strand at 466.535 kb on - strand at 466.641 kb on + strand at 466.641 kb on + strand at 466.641 kb on + strand at 466.642 kb on - strand at 466.673 kb on + strand at 466.673 kb on + strand at 466.673 kb on + strand at 466.674 kb on - strand at 466.674 kb on - strand at 466.674 kb on - strand at 466.722 kb on - strand at 466.808 kb on + strand at 466.808 kb on + strand at 466.809 kb on - strand at 466.973 kb on + strand, within SM_b20454 at 466.973 kb on + strand, within SM_b20454 at 466.974 kb on - strand, within SM_b20454 at 467.055 kb on - strand, within SM_b20454 at 467.055 kb on - strand, within SM_b20454 at 467.063 kb on - strand, within SM_b20454 at 467.176 kb on + strand, within SM_b20454 at 467.177 kb on - strand, within SM_b20454 at 467.183 kb on - strand, within SM_b20454 at 467.183 kb on - strand, within SM_b20454 at 467.190 kb on - strand, within SM_b20454 at 467.213 kb on + strand at 467.213 kb on + strand at 467.214 kb on - strand at 467.294 kb on - strand at 467.294 kb on - strand at 467.294 kb on - strand at 467.340 kb on + strand at 467.341 kb on - strand at 467.341 kb on - strand at 467.341 kb on - strand at 467.359 kb on + strand at 467.360 kb on - strand at 467.360 kb on - strand at 467.360 kb on - strand at 467.360 kb on - strand at 467.431 kb on + strand, within SM_b20455 at 467.431 kb on + strand, within SM_b20455 at 467.472 kb on + strand, within SM_b20455 at 467.473 kb on - strand, within SM_b20455 at 467.483 kb on - strand, within SM_b20455 at 467.559 kb on + strand, within SM_b20455 at 467.559 kb on + strand, within SM_b20455 at 467.559 kb on + strand, within SM_b20455 at 467.667 kb on - strand, within SM_b20455 at 467.680 kb on + strand, within SM_b20455 at 467.680 kb on + strand, within SM_b20455 at 467.801 kb on - strand, within SM_b20455 at 467.830 kb on + strand, within SM_b20455 at 467.890 kb on + strand, within SM_b20455 at 467.891 kb on - strand, within SM_b20455 at 467.973 kb on - strand at 467.979 kb on + strand at 467.980 kb on - strand at 467.980 kb on - strand at 467.980 kb on - strand at 467.980 kb on - strand at 468.021 kb on + strand at 468.022 kb on - strand at 468.191 kb on + strand, within SM_b20456 at 468.192 kb on - strand, within SM_b20456 at 468.192 kb on - strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.343 kb on - strand, within SM_b20456 at 468.424 kb on + strand, within SM_b20456 at 468.425 kb on - strand, within SM_b20456 at 468.545 kb on + strand, within SM_b20456 at 468.545 kb on + strand, within SM_b20456 at 468.546 kb on - strand, within SM_b20456 at 468.716 kb on + strand, within SM_b20456 at 468.718 kb on - strand, within SM_b20456 at 468.858 kb on + strand at 468.858 kb on + strand at 468.859 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 466,403 + SM_b20453 0.83 +0.8 466,471 + -2.9 466,535 - +0.5 466,641 + +0.1 466,641 + -1.2 466,641 + -0.3 466,642 - +1.2 466,673 + +0.2 466,673 + +0.4 466,673 + -0.2 466,674 - -1.5 466,674 - -0.4 466,674 - -1.0 466,722 - +0.2 466,808 + -0.7 466,808 + -0.2 466,809 - +0.1 466,973 + SM_b20454 0.33 -0.8 466,973 + SM_b20454 0.33 +0.0 466,974 - SM_b20454 0.33 -0.2 467,055 - SM_b20454 0.53 +0.7 467,055 - SM_b20454 0.53 -0.3 467,063 - SM_b20454 0.55 -0.7 467,176 + SM_b20454 0.81 -1.1 467,177 - SM_b20454 0.82 +0.1 467,183 - SM_b20454 0.83 +0.1 467,183 - SM_b20454 0.83 -0.5 467,190 - SM_b20454 0.85 +0.5 467,213 + -0.3 467,213 + -0.3 467,214 - -0.9 467,294 - +0.4 467,294 - -0.2 467,294 - +1.2 467,340 + +2.3 467,341 - -0.3 467,341 - +0.3 467,341 - +0.5 467,359 + +1.6 467,360 - -0.4 467,360 - -0.2 467,360 - -0.2 467,360 - -0.2 467,431 + SM_b20455 0.12 -2.4 467,431 + SM_b20455 0.12 -1.2 467,472 + SM_b20455 0.19 -0.4 467,473 - SM_b20455 0.19 -0.2 467,483 - SM_b20455 0.20 -1.1 467,559 + SM_b20455 0.33 -1.2 467,559 + SM_b20455 0.33 +0.3 467,559 + SM_b20455 0.33 -2.2 467,667 - SM_b20455 0.50 -0.0 467,680 + SM_b20455 0.52 -1.8 467,680 + SM_b20455 0.52 +0.5 467,801 - SM_b20455 0.72 -1.0 467,830 + SM_b20455 0.77 -0.0 467,890 + SM_b20455 0.87 +0.3 467,891 - SM_b20455 0.87 -0.7 467,973 - +0.3 467,979 + -0.6 467,980 - -0.8 467,980 - -1.3 467,980 - +0.0 467,980 - -0.4 468,021 + -0.6 468,022 - +0.0 468,191 + SM_b20456 0.15 -0.2 468,192 - SM_b20456 0.15 -0.5 468,192 - SM_b20456 0.15 -1.5 468,342 + SM_b20456 0.35 -0.1 468,342 + SM_b20456 0.35 -0.5 468,342 + SM_b20456 0.35 +0.2 468,342 + SM_b20456 0.35 +0.5 468,343 - SM_b20456 0.36 +0.2 468,424 + SM_b20456 0.46 +0.8 468,425 - SM_b20456 0.47 -0.5 468,545 + SM_b20456 0.63 -0.8 468,545 + SM_b20456 0.63 -0.1 468,546 - SM_b20456 0.63 +0.8 468,716 + SM_b20456 0.86 -2.3 468,718 - SM_b20456 0.86 +0.2 468,858 + +0.3 468,858 + +1.1 468,859 - +0.2
Or see this region's nucleotide sequence