Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20449

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20447 and SM_b20448 are separated by 75 nucleotidesSM_b20448 and SM_b20449 are separated by 116 nucleotidesSM_b20449 and SM_b20450 overlap by 4 nucleotides SM_b20447: SM_b20447 - hypothetical protein, at 458,865 to 460,559 _b20447 SM_b20448: SM_b20448 - hypothetical protein, at 460,635 to 461,153 _b20448 SM_b20449: SM_b20449 - methyltransferase, at 461,270 to 462,328 _b20449 SM_b20450: SM_b20450 - regulatory protein, at 462,325 to 464,685 _b20450 Position (kb) 461 462 463Strain fitness (log2 ratio) -3 -2 -1 0 1at 460.305 kb on + strand, within SM_b20447at 460.306 kb on - strand, within SM_b20447at 460.591 kb on - strandat 460.766 kb on - strand, within SM_b20448at 460.787 kb on + strand, within SM_b20448at 460.787 kb on + strand, within SM_b20448at 460.831 kb on + strandat 460.832 kb on - strand, within SM_b20448at 460.953 kb on - strand, within SM_b20448at 460.998 kb on + strand, within SM_b20448at 461.155 kb on + strandat 461.156 kb on - strandat 461.265 kb on + strandat 461.266 kb on - strandat 461.275 kb on + strandat 461.276 kb on - strandat 461.276 kb on - strandat 461.276 kb on - strandat 461.309 kb on + strandat 461.309 kb on + strandat 461.309 kb on + strandat 461.310 kb on - strandat 461.310 kb on - strandat 461.310 kb on - strandat 461.351 kb on + strandat 461.351 kb on + strandat 461.352 kb on - strandat 461.498 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.646 kb on + strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.647 kb on - strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.786 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.788 kb on + strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.789 kb on - strand, within SM_b20449at 461.792 kb on + strand, within SM_b20449at 461.792 kb on + strand, within SM_b20449at 461.792 kb on + strand, within SM_b20449at 461.793 kb on - strand, within SM_b20449at 461.793 kb on - strand, within SM_b20449at 461.793 kb on - strand, within SM_b20449at 461.931 kb on - strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.932 kb on + strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.933 kb on - strand, within SM_b20449at 461.934 kb on + strand, within SM_b20449at 461.934 kb on + strand, within SM_b20449at 461.935 kb on - strand, within SM_b20449at 461.996 kb on + strand, within SM_b20449at 461.997 kb on - strand, within SM_b20449at 461.997 kb on - strand, within SM_b20449at 462.176 kb on + strand, within SM_b20449at 462.177 kb on - strand, within SM_b20449at 462.195 kb on + strand, within SM_b20449at 462.282 kb on - strandat 462.518 kb on - strandat 462.518 kb on - strandat 462.518 kb on - strandat 462.519 kb on + strandat 462.530 kb on - strandat 462.530 kb on - strandat 462.880 kb on + strand, within SM_b20450at 462.880 kb on + strand, within SM_b20450at 462.881 kb on - strand, within SM_b20450at 462.881 kb on - strand, within SM_b20450at 462.881 kb on - strand, within SM_b20450at 462.881 kb on - strand, within SM_b20450at 462.881 kb on - strand, within SM_b20450at 462.883 kb on + strand, within SM_b20450at 462.883 kb on + strand, within SM_b20450at 462.883 kb on + strand, within SM_b20450at 462.883 kb on + strand, within SM_b20450at 462.885 kb on + strand, within SM_b20450at 462.886 kb on - strand, within SM_b20450at 462.926 kb on - strand, within SM_b20450at 462.926 kb on - strand, within SM_b20450at 462.928 kb on - strand, within SM_b20450at 463.009 kb on + strand, within SM_b20450at 463.085 kb on - strand, within SM_b20450at 463.085 kb on - strand, within SM_b20450at 463.085 kb on - strand, within SM_b20450at 463.086 kb on + strand, within SM_b20450at 463.218 kb on + strand, within SM_b20450

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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460,305 + SM_b20447 0.85 -0.2
460,306 - SM_b20447 0.85 -0.3
460,591 - +1.3
460,766 - SM_b20448 0.25 -0.5
460,787 + SM_b20448 0.29 +1.1
460,787 + SM_b20448 0.29 +0.5
460,831 + +0.7
460,832 - SM_b20448 0.38 -0.4
460,953 - SM_b20448 0.61 -0.3
460,998 + SM_b20448 0.70 +0.6
461,155 + +0.3
461,156 - +0.2
461,265 + +0.5
461,266 - -1.0
461,275 + +0.5
461,276 - -1.1
461,276 - -2.8
461,276 - +1.1
461,309 + +0.3
461,309 + +0.2
461,309 + +0.4
461,310 - -1.8
461,310 - -1.1
461,310 - -0.3
461,351 + +0.1
461,351 + -1.3
461,352 - +0.3
461,498 + SM_b20449 0.22 -1.5
461,646 + SM_b20449 0.36 -0.0
461,646 + SM_b20449 0.36 -0.2
461,646 + SM_b20449 0.36 +0.3
461,646 + SM_b20449 0.36 -0.1
461,646 + SM_b20449 0.36 +0.4
461,646 + SM_b20449 0.36 -0.4
461,646 + SM_b20449 0.36 -0.6
461,646 + SM_b20449 0.36 -1.3
461,646 + SM_b20449 0.36 -0.4
461,646 + SM_b20449 0.36 -0.3
461,646 + SM_b20449 0.36 +0.5
461,646 + SM_b20449 0.36 +0.3
461,647 - SM_b20449 0.36 -1.9
461,647 - SM_b20449 0.36 -1.4
461,647 - SM_b20449 0.36 -0.7
461,647 - SM_b20449 0.36 -1.5
461,647 - SM_b20449 0.36 -1.6
461,647 - SM_b20449 0.36 -1.7
461,647 - SM_b20449 0.36 -2.2
461,786 + SM_b20449 0.49 -1.7
461,786 + SM_b20449 0.49 -0.0
461,786 + SM_b20449 0.49 +0.4
461,786 + SM_b20449 0.49 -0.3
461,786 + SM_b20449 0.49 -0.2
461,788 + SM_b20449 0.49 -1.6
461,788 + SM_b20449 0.49 +0.9
461,788 + SM_b20449 0.49 +0.3
461,788 + SM_b20449 0.49 -2.1
461,788 + SM_b20449 0.49 -1.7
461,789 - SM_b20449 0.49 -1.6
461,789 - SM_b20449 0.49 -2.1
461,789 - SM_b20449 0.49 -0.4
461,789 - SM_b20449 0.49 +1.7
461,792 + SM_b20449 0.49 -0.0
461,792 + SM_b20449 0.49 +1.0
461,792 + SM_b20449 0.49 -0.0
461,793 - SM_b20449 0.49 -1.0
461,793 - SM_b20449 0.49 -1.9
461,793 - SM_b20449 0.49 -1.2
461,931 - SM_b20449 0.62 -1.6
461,932 + SM_b20449 0.63 -1.6
461,932 + SM_b20449 0.63 +0.2
461,932 + SM_b20449 0.63 +1.0
461,932 + SM_b20449 0.63 -0.2
461,932 + SM_b20449 0.63 +0.2
461,933 - SM_b20449 0.63 -0.3
461,933 - SM_b20449 0.63 -0.3
461,933 - SM_b20449 0.63 -0.8
461,933 - SM_b20449 0.63 -0.9
461,934 + SM_b20449 0.63 -0.4
461,934 + SM_b20449 0.63 +1.5
461,935 - SM_b20449 0.63 -1.0
461,996 + SM_b20449 0.69 +1.3
461,997 - SM_b20449 0.69 -0.9
461,997 - SM_b20449 0.69 -3.0
462,176 + SM_b20449 0.86 -3.4
462,177 - SM_b20449 0.86 -1.4
462,195 + SM_b20449 0.87 -1.7
462,282 - -0.5
462,518 - -1.5
462,518 - -1.7
462,518 - -1.6
462,519 + -1.4
462,530 - -1.5
462,530 - +0.5
462,880 + SM_b20450 0.24 -1.1
462,880 + SM_b20450 0.24 -0.9
462,881 - SM_b20450 0.24 -1.0
462,881 - SM_b20450 0.24 -0.7
462,881 - SM_b20450 0.24 -1.5
462,881 - SM_b20450 0.24 -1.6
462,881 - SM_b20450 0.24 -1.6
462,883 + SM_b20450 0.24 -1.1
462,883 + SM_b20450 0.24 -0.8
462,883 + SM_b20450 0.24 -1.0
462,883 + SM_b20450 0.24 -1.1
462,885 + SM_b20450 0.24 -1.9
462,886 - SM_b20450 0.24 -1.5
462,926 - SM_b20450 0.25 -1.3
462,926 - SM_b20450 0.25 -1.5
462,928 - SM_b20450 0.26 -1.7
463,009 + SM_b20450 0.29 -1.3
463,085 - SM_b20450 0.32 -0.7
463,085 - SM_b20450 0.32 -0.6
463,085 - SM_b20450 0.32 -1.5
463,086 + SM_b20450 0.32 -0.4
463,218 + SM_b20450 0.38 -0.7

Or see this region's nucleotide sequence