Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20404 and SM_b20405 are separated by 12 nucleotides SM_b20405 and SM_b20406 are separated by 127 nucleotides SM_b20406 and SM_b20407 are separated by 8 nucleotides
SM_b20404: SM_b20404 - aldehyde dehydrogenase, at 416,859 to 419,099
_b20404
SM_b20405: SM_b20405 - transcriptional regulator, at 419,112 to 419,891
_b20405
SM_b20406: SM_b20406 - 5-oxoprolinase, at 420,019 to 422,133
_b20406
SM_b20407: SM_b20407 - 5-oxoprolinase, at 422,142 to 424,343
_b20407
Position (kb) 420
421
422
423 Strain fitness (log2 ratio) -2
-1
0
1
2 at 419.060 kb on + strand at 419.182 kb on + strand at 419.183 kb on - strand at 419.183 kb on - strand at 419.183 kb on - strand at 419.530 kb on - strand, within SM_b20405 at 419.581 kb on + strand, within SM_b20405 at 419.581 kb on + strand, within SM_b20405 at 419.676 kb on + strand, within SM_b20405 at 419.677 kb on - strand, within SM_b20405 at 419.680 kb on + strand, within SM_b20405 at 419.680 kb on + strand, within SM_b20405 at 419.680 kb on + strand, within SM_b20405 at 419.680 kb on + strand, within SM_b20405 at 419.681 kb on - strand, within SM_b20405 at 419.683 kb on + strand, within SM_b20405 at 419.683 kb on + strand, within SM_b20405 at 419.684 kb on - strand, within SM_b20405 at 419.684 kb on - strand, within SM_b20405 at 419.687 kb on + strand, within SM_b20405 at 419.687 kb on + strand, within SM_b20405 at 419.688 kb on - strand, within SM_b20405 at 419.762 kb on - strand, within SM_b20405 at 419.808 kb on - strand, within SM_b20405 at 419.901 kb on + strand at 419.901 kb on + strand at 419.966 kb on + strand at 419.966 kb on + strand at 419.966 kb on + strand at 419.966 kb on + strand at 419.967 kb on - strand at 419.967 kb on - strand at 419.997 kb on + strand at 419.998 kb on - strand at 420.168 kb on + strand at 420.212 kb on - strand at 420.335 kb on - strand, within SM_b20406 at 420.335 kb on - strand, within SM_b20406 at 420.335 kb on - strand, within SM_b20406 at 420.458 kb on - strand, within SM_b20406 at 420.552 kb on - strand, within SM_b20406 at 420.619 kb on + strand, within SM_b20406 at 420.619 kb on + strand, within SM_b20406 at 420.621 kb on + strand, within SM_b20406 at 420.621 kb on + strand, within SM_b20406 at 420.688 kb on + strand, within SM_b20406 at 420.723 kb on + strand, within SM_b20406 at 420.741 kb on + strand, within SM_b20406 at 420.741 kb on + strand, within SM_b20406 at 420.742 kb on - strand, within SM_b20406 at 420.866 kb on - strand, within SM_b20406 at 420.866 kb on - strand, within SM_b20406 at 420.888 kb on + strand, within SM_b20406 at 420.888 kb on + strand, within SM_b20406 at 420.930 kb on + strand, within SM_b20406 at 421.077 kb on - strand, within SM_b20406 at 421.192 kb on + strand, within SM_b20406 at 421.192 kb on + strand, within SM_b20406 at 421.192 kb on + strand, within SM_b20406 at 421.280 kb on + strand, within SM_b20406 at 421.281 kb on - strand, within SM_b20406 at 421.347 kb on + strand, within SM_b20406 at 421.510 kb on + strand, within SM_b20406 at 421.510 kb on + strand, within SM_b20406 at 421.511 kb on - strand, within SM_b20406 at 421.511 kb on - strand, within SM_b20406 at 421.512 kb on + strand, within SM_b20406 at 421.512 kb on + strand, within SM_b20406 at 421.513 kb on - strand, within SM_b20406 at 421.699 kb on + strand, within SM_b20406 at 421.798 kb on + strand, within SM_b20406 at 421.798 kb on + strand, within SM_b20406 at 421.799 kb on - strand, within SM_b20406 at 421.799 kb on - strand, within SM_b20406 at 421.799 kb on - strand, within SM_b20406 at 421.960 kb on + strand at 421.960 kb on + strand at 421.961 kb on - strand at 421.961 kb on - strand at 421.961 kb on - strand at 421.961 kb on - strand at 421.962 kb on + strand at 421.963 kb on - strand at 421.994 kb on - strand at 422.119 kb on + strand at 422.227 kb on - strand at 422.227 kb on - strand at 422.304 kb on + strand at 422.305 kb on - strand at 422.388 kb on + strand, within SM_b20407 at 422.485 kb on - strand, within SM_b20407 at 422.542 kb on + strand, within SM_b20407 at 422.543 kb on - strand, within SM_b20407 at 422.543 kb on - strand, within SM_b20407 at 422.591 kb on + strand, within SM_b20407 at 422.592 kb on - strand, within SM_b20407 at 422.592 kb on - strand, within SM_b20407 at 422.751 kb on + strand, within SM_b20407 at 422.755 kb on + strand, within SM_b20407 at 422.755 kb on + strand, within SM_b20407 at 422.756 kb on - strand, within SM_b20407 at 422.790 kb on + strand, within SM_b20407 at 422.848 kb on + strand, within SM_b20407 at 422.880 kb on + strand, within SM_b20407 at 422.881 kb on - strand, within SM_b20407 at 422.986 kb on - strand, within SM_b20407 at 422.986 kb on - strand, within SM_b20407 at 423.046 kb on - strand, within SM_b20407 at 423.046 kb on - strand, within SM_b20407 at 423.046 kb on - strand, within SM_b20407 at 423.124 kb on - strand, within SM_b20407
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 419,060 + -2.5 419,182 + -0.5 419,183 - -0.3 419,183 - -0.7 419,183 - -0.5 419,530 - SM_b20405 0.54 -1.1 419,581 + SM_b20405 0.60 +0.4 419,581 + SM_b20405 0.60 +0.1 419,676 + SM_b20405 0.72 -0.5 419,677 - SM_b20405 0.72 +0.7 419,680 + SM_b20405 0.73 +0.0 419,680 + SM_b20405 0.73 +0.1 419,680 + SM_b20405 0.73 -2.1 419,680 + SM_b20405 0.73 -0.5 419,681 - SM_b20405 0.73 +0.1 419,683 + SM_b20405 0.73 -1.6 419,683 + SM_b20405 0.73 -0.6 419,684 - SM_b20405 0.73 +0.4 419,684 - SM_b20405 0.73 -0.6 419,687 + SM_b20405 0.74 +0.4 419,687 + SM_b20405 0.74 -0.4 419,688 - SM_b20405 0.74 -0.0 419,762 - SM_b20405 0.83 +1.0 419,808 - SM_b20405 0.89 -0.1 419,901 + +0.1 419,901 + +0.5 419,966 + +0.7 419,966 + +0.2 419,966 + -0.6 419,966 + -0.1 419,967 - +0.2 419,967 - -0.5 419,997 + -1.1 419,998 - -0.2 420,168 + +0.2 420,212 - +0.4 420,335 - SM_b20406 0.15 -2.3 420,335 - SM_b20406 0.15 -0.4 420,335 - SM_b20406 0.15 -0.5 420,458 - SM_b20406 0.21 -0.7 420,552 - SM_b20406 0.25 +0.4 420,619 + SM_b20406 0.28 +0.2 420,619 + SM_b20406 0.28 -1.3 420,621 + SM_b20406 0.28 +0.3 420,621 + SM_b20406 0.28 -0.6 420,688 + SM_b20406 0.32 +0.0 420,723 + SM_b20406 0.33 +0.9 420,741 + SM_b20406 0.34 -1.6 420,741 + SM_b20406 0.34 +0.2 420,742 - SM_b20406 0.34 -0.3 420,866 - SM_b20406 0.40 +0.0 420,866 - SM_b20406 0.40 +0.3 420,888 + SM_b20406 0.41 -0.5 420,888 + SM_b20406 0.41 +0.5 420,930 + SM_b20406 0.43 -0.4 421,077 - SM_b20406 0.50 -0.3 421,192 + SM_b20406 0.55 -1.3 421,192 + SM_b20406 0.55 +0.0 421,192 + SM_b20406 0.55 -0.3 421,280 + SM_b20406 0.60 -0.7 421,281 - SM_b20406 0.60 -0.1 421,347 + SM_b20406 0.63 -1.1 421,510 + SM_b20406 0.70 +2.3 421,510 + SM_b20406 0.70 -1.1 421,511 - SM_b20406 0.71 -0.2 421,511 - SM_b20406 0.71 -0.8 421,512 + SM_b20406 0.71 -0.7 421,512 + SM_b20406 0.71 -0.3 421,513 - SM_b20406 0.71 +0.8 421,699 + SM_b20406 0.79 -0.1 421,798 + SM_b20406 0.84 -1.2 421,798 + SM_b20406 0.84 -0.3 421,799 - SM_b20406 0.84 -0.1 421,799 - SM_b20406 0.84 -0.7 421,799 - SM_b20406 0.84 +1.2 421,960 + -0.7 421,960 + -0.3 421,961 - -0.5 421,961 - +1.0 421,961 - +1.1 421,961 - -0.5 421,962 + +0.6 421,963 - +0.6 421,994 - -0.4 422,119 + -0.3 422,227 - +1.0 422,227 - -0.7 422,304 + +0.2 422,305 - +1.3 422,388 + SM_b20407 0.11 +1.8 422,485 - SM_b20407 0.16 +0.9 422,542 + SM_b20407 0.18 -1.4 422,543 - SM_b20407 0.18 +0.1 422,543 - SM_b20407 0.18 -0.2 422,591 + SM_b20407 0.20 -0.5 422,592 - SM_b20407 0.20 +0.2 422,592 - SM_b20407 0.20 -0.3 422,751 + SM_b20407 0.28 +0.2 422,755 + SM_b20407 0.28 +0.0 422,755 + SM_b20407 0.28 -0.2 422,756 - SM_b20407 0.28 +0.3 422,790 + SM_b20407 0.29 +0.3 422,848 + SM_b20407 0.32 -0.4 422,880 + SM_b20407 0.34 -0.0 422,881 - SM_b20407 0.34 +0.3 422,986 - SM_b20407 0.38 +0.6 422,986 - SM_b20407 0.38 +1.1 423,046 - SM_b20407 0.41 -0.1 423,046 - SM_b20407 0.41 -1.0 423,046 - SM_b20407 0.41 +0.4 423,124 - SM_b20407 0.45 -2.4
Or see this region's nucleotide sequence