Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20327

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20326 and SM_b20327 overlap by 1 nucleotidesSM_b20327 and SM_b20328 are separated by 9 nucleotides SM_b20326: SM_b20326 - ABC transporter for D-trehalose/D-maltose/sucrose, permease component 1 (ThuF) (from data), at 329,457 to 330,443 _b20326 SM_b20327: SM_b20327 - ABC transporter for D-trehalose/D-maltose/sucrose, permease component 2 (ThuG) (from data), at 330,443 to 331,273 _b20327 SM_b20328: SM_b20328 - ABC transporter for D-trehalose/D-maltose/sucrose, ATPase component (ThuK) (from data), at 331,283 to 332,311 _b20328 Position (kb) 330 331 332Strain fitness (log2 ratio) -2 -1 0 1at 329.446 kb on - strandat 329.619 kb on + strand, within SM_b20326at 329.619 kb on + strand, within SM_b20326at 329.619 kb on + strand, within SM_b20326at 329.619 kb on + strand, within SM_b20326at 329.686 kb on - strand, within SM_b20326at 329.777 kb on + strand, within SM_b20326at 329.777 kb on + strand, within SM_b20326at 330.123 kb on + strand, within SM_b20326at 330.123 kb on + strand, within SM_b20326at 330.258 kb on + strand, within SM_b20326at 330.259 kb on - strand, within SM_b20326at 330.399 kb on + strandat 330.400 kb on - strandat 330.400 kb on - strandat 330.400 kb on - strandat 330.400 kb on - strandat 330.477 kb on - strandat 330.522 kb on - strandat 330.522 kb on - strandat 330.525 kb on - strandat 330.575 kb on + strand, within SM_b20327at 330.590 kb on - strand, within SM_b20327at 330.605 kb on + strand, within SM_b20327at 330.605 kb on + strand, within SM_b20327at 330.606 kb on - strand, within SM_b20327at 330.606 kb on - strand, within SM_b20327at 330.685 kb on - strand, within SM_b20327at 330.714 kb on - strand, within SM_b20327at 330.729 kb on + strand, within SM_b20327at 330.729 kb on + strand, within SM_b20327at 330.730 kb on - strand, within SM_b20327at 330.869 kb on + strand, within SM_b20327at 331.272 kb on - strandat 331.549 kb on + strand, within SM_b20328at 331.559 kb on + strand, within SM_b20328at 331.662 kb on + strand, within SM_b20328at 331.850 kb on + strand, within SM_b20328at 331.850 kb on + strand, within SM_b20328at 331.851 kb on - strand, within SM_b20328at 331.897 kb on - strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.034 kb on - strand, within SM_b20328at 332.034 kb on - strand, within SM_b20328at 332.034 kb on - strand, within SM_b20328at 332.141 kb on + strand, within SM_b20328at 332.141 kb on + strand, within SM_b20328at 332.142 kb on - strand, within SM_b20328at 332.142 kb on - strand, within SM_b20328at 332.142 kb on - strand, within SM_b20328at 332.142 kb on - strand, within SM_b20328at 332.143 kb on + strand, within SM_b20328at 332.144 kb on - strand, within SM_b20328at 332.144 kb on - strand, within SM_b20328at 332.144 kb on - strand, within SM_b20328at 332.144 kb on - strand, within SM_b20328at 332.144 kb on - strand, within SM_b20328at 332.147 kb on + strand, within SM_b20328at 332.148 kb on - strand, within SM_b20328

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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329,446 - -1.4
329,619 + SM_b20326 0.16 +1.0
329,619 + SM_b20326 0.16 +0.1
329,619 + SM_b20326 0.16 -0.1
329,619 + SM_b20326 0.16 -0.5
329,686 - SM_b20326 0.23 -0.1
329,777 + SM_b20326 0.32 +0.0
329,777 + SM_b20326 0.32 +0.1
330,123 + SM_b20326 0.67 -1.8
330,123 + SM_b20326 0.67 -0.3
330,258 + SM_b20326 0.81 +0.4
330,259 - SM_b20326 0.81 +0.6
330,399 + +0.2
330,400 - +0.2
330,400 - +0.2
330,400 - +0.8
330,400 - +0.2
330,477 - +0.0
330,522 - +0.1
330,522 - +0.2
330,525 - +0.2
330,575 + SM_b20327 0.16 -0.3
330,590 - SM_b20327 0.18 +0.6
330,605 + SM_b20327 0.19 +0.3
330,605 + SM_b20327 0.19 +0.1
330,606 - SM_b20327 0.20 +0.4
330,606 - SM_b20327 0.20 -0.5
330,685 - SM_b20327 0.29 -1.6
330,714 - SM_b20327 0.33 +0.2
330,729 + SM_b20327 0.34 -0.3
330,729 + SM_b20327 0.34 +0.6
330,730 - SM_b20327 0.35 +0.5
330,869 + SM_b20327 0.51 -1.4
331,272 - -0.1
331,549 + SM_b20328 0.26 -2.1
331,559 + SM_b20328 0.27 -0.4
331,662 + SM_b20328 0.37 +0.6
331,850 + SM_b20328 0.55 -0.4
331,850 + SM_b20328 0.55 -0.2
331,851 - SM_b20328 0.55 -1.0
331,897 - SM_b20328 0.60 +1.4
332,033 + SM_b20328 0.73 -1.3
332,033 + SM_b20328 0.73 +0.7
332,033 + SM_b20328 0.73 -1.1
332,033 + SM_b20328 0.73 +0.2
332,033 + SM_b20328 0.73 -1.6
332,033 + SM_b20328 0.73 +0.8
332,034 - SM_b20328 0.73 -0.5
332,034 - SM_b20328 0.73 +0.1
332,034 - SM_b20328 0.73 -0.3
332,141 + SM_b20328 0.83 +0.5
332,141 + SM_b20328 0.83 -1.2
332,142 - SM_b20328 0.83 -1.4
332,142 - SM_b20328 0.83 -0.1
332,142 - SM_b20328 0.83 +0.3
332,142 - SM_b20328 0.83 +0.3
332,143 + SM_b20328 0.84 -0.9
332,144 - SM_b20328 0.84 -0.9
332,144 - SM_b20328 0.84 +0.4
332,144 - SM_b20328 0.84 +0.7
332,144 - SM_b20328 0.84 -0.4
332,144 - SM_b20328 0.84 +0.4
332,147 + SM_b20328 0.84 -2.6
332,148 - SM_b20328 0.84 +0.0

Or see this region's nucleotide sequence