Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20168 and SM_b20169 are separated by 128 nucleotides SM_b20169 and SM_b20170 are separated by 169 nucleotides
SM_b20168: SM_b20168 - hypothetical protein, at 186,369 to 187,466
_b20168
SM_b20169: SM_b20169 - hypothetical protein, at 187,595 to 188,236
_b20169
SM_b20170: SM_b20170 - glutathione-dependent formaldehyde dehydrogenase, at 188,406 to 189,533
_b20170
Position (kb) 187
188
189 Strain fitness (log2 ratio) -2
-1
0
1
2 at 186.716 kb on - strand, within SM_b20168 at 186.777 kb on + strand, within SM_b20168 at 186.777 kb on + strand, within SM_b20168 at 186.778 kb on - strand, within SM_b20168 at 186.833 kb on + strand, within SM_b20168 at 186.833 kb on + strand, within SM_b20168 at 186.834 kb on - strand, within SM_b20168 at 186.834 kb on - strand, within SM_b20168 at 186.939 kb on + strand, within SM_b20168 at 187.296 kb on + strand, within SM_b20168 at 187.465 kb on - strand at 187.512 kb on + strand at 187.674 kb on + strand, within SM_b20169 at 187.674 kb on + strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.701 kb on + strand, within SM_b20169 at 187.882 kb on + strand, within SM_b20169 at 188.101 kb on + strand, within SM_b20169 at 188.177 kb on + strand at 188.178 kb on - strand at 188.178 kb on - strand at 188.269 kb on + strand at 188.271 kb on + strand at 188.271 kb on + strand at 188.272 kb on - strand at 188.272 kb on - strand at 188.313 kb on + strand at 188.313 kb on + strand at 188.314 kb on - strand at 188.349 kb on + strand at 188.350 kb on - strand at 188.380 kb on + strand at 188.384 kb on + strand at 188.384 kb on + strand at 188.385 kb on - strand at 188.389 kb on + strand at 188.389 kb on + strand at 188.389 kb on + strand at 188.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 186,716 - SM_b20168 0.32 -1.0 186,777 + SM_b20168 0.37 -0.0 186,777 + SM_b20168 0.37 +0.3 186,778 - SM_b20168 0.37 +2.2 186,833 + SM_b20168 0.42 -0.1 186,833 + SM_b20168 0.42 -0.3 186,834 - SM_b20168 0.42 -2.0 186,834 - SM_b20168 0.42 -0.8 186,939 + SM_b20168 0.52 -0.2 187,296 + SM_b20168 0.84 +1.5 187,465 - -1.4 187,512 + +0.0 187,674 + SM_b20169 0.12 +0.1 187,674 + SM_b20169 0.12 +0.3 187,675 - SM_b20169 0.12 +1.0 187,675 - SM_b20169 0.12 +0.1 187,675 - SM_b20169 0.12 +0.6 187,675 - SM_b20169 0.12 -0.8 187,675 - SM_b20169 0.12 -0.0 187,675 - SM_b20169 0.12 +0.7 187,675 - SM_b20169 0.12 +0.5 187,701 + SM_b20169 0.17 -0.3 187,882 + SM_b20169 0.45 -0.1 188,101 + SM_b20169 0.79 +0.8 188,177 + -0.7 188,178 - +0.4 188,178 - +0.4 188,269 + -0.1 188,271 + +0.1 188,271 + -0.1 188,272 - -1.6 188,272 - -1.6 188,313 + +0.3 188,313 + -0.5 188,314 - +1.4 188,349 + +2.3 188,350 - +0.2 188,380 + -1.0 188,384 + -0.4 188,384 + +0.2 188,385 - -0.5 188,389 + -0.4 188,389 + -0.1 188,389 + -1.2 188,390 - +0.2
Or see this region's nucleotide sequence