Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20158 and SM_b20159 are separated by 53 nucleotides SM_b20159 and SM_b22005 are separated by 678 nucleotides
SM_b20158: SM_b20158 - ABC transporter substrate-binding protein, at 176,427 to 177,551
_b20158
SM_b20159: SM_b20159 - inositol monophosphatase, at 177,605 to 178,489
_b20159
SM_b22005: SM_b22005 - hypothetical protein, at 179,168 to 179,536
_b22005
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1 at 176.623 kb on - strand, within SM_b20158 at 176.781 kb on + strand, within SM_b20158 at 176.781 kb on + strand, within SM_b20158 at 176.781 kb on + strand, within SM_b20158 at 176.782 kb on - strand, within SM_b20158 at 176.782 kb on - strand, within SM_b20158 at 176.782 kb on - strand, within SM_b20158 at 176.865 kb on + strand, within SM_b20158 at 176.880 kb on + strand, within SM_b20158 at 176.905 kb on + strand, within SM_b20158 at 176.905 kb on + strand, within SM_b20158 at 176.905 kb on + strand, within SM_b20158 at 176.973 kb on + strand, within SM_b20158 at 176.974 kb on - strand, within SM_b20158 at 176.974 kb on - strand, within SM_b20158 at 176.975 kb on + strand, within SM_b20158 at 177.231 kb on + strand, within SM_b20158 at 177.279 kb on + strand, within SM_b20158 at 177.279 kb on + strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.345 kb on + strand, within SM_b20158 at 177.345 kb on + strand, within SM_b20158 at 177.345 kb on + strand, within SM_b20158 at 177.346 kb on - strand, within SM_b20158 at 177.346 kb on - strand, within SM_b20158 at 177.348 kb on - strand, within SM_b20158 at 177.752 kb on + strand, within SM_b20159 at 177.753 kb on - strand, within SM_b20159 at 177.777 kb on + strand, within SM_b20159 at 177.777 kb on + strand, within SM_b20159 at 177.778 kb on - strand, within SM_b20159 at 177.820 kb on + strand, within SM_b20159 at 177.821 kb on - strand, within SM_b20159 at 178.002 kb on - strand, within SM_b20159 at 178.338 kb on - strand, within SM_b20159 at 178.397 kb on + strand, within SM_b20159 at 178.612 kb on - strand at 178.740 kb on + strand at 178.810 kb on - strand at 178.866 kb on + strand at 178.869 kb on + strand at 178.869 kb on + strand at 178.870 kb on - strand at 178.870 kb on - strand at 178.870 kb on - strand at 178.897 kb on + strand at 178.897 kb on + strand at 178.917 kb on + strand at 178.918 kb on - strand at 179.000 kb on - strand at 179.000 kb on - strand at 179.088 kb on + strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 176,623 - SM_b20158 0.17 -0.4 176,781 + SM_b20158 0.31 +0.4 176,781 + SM_b20158 0.31 -0.1 176,781 + SM_b20158 0.31 +0.0 176,782 - SM_b20158 0.32 +0.4 176,782 - SM_b20158 0.32 +0.3 176,782 - SM_b20158 0.32 -0.2 176,865 + SM_b20158 0.39 +0.1 176,880 + SM_b20158 0.40 +1.2 176,905 + SM_b20158 0.42 +0.3 176,905 + SM_b20158 0.42 -0.2 176,905 + SM_b20158 0.42 +0.1 176,973 + SM_b20158 0.49 +0.3 176,974 - SM_b20158 0.49 +0.2 176,974 - SM_b20158 0.49 -0.4 176,975 + SM_b20158 0.49 -0.0 177,231 + SM_b20158 0.71 -0.8 177,279 + SM_b20158 0.76 +0.0 177,279 + SM_b20158 0.76 +0.5 177,280 - SM_b20158 0.76 +0.5 177,280 - SM_b20158 0.76 -0.5 177,280 - SM_b20158 0.76 +0.7 177,280 - SM_b20158 0.76 +0.4 177,345 + SM_b20158 0.82 -0.4 177,345 + SM_b20158 0.82 +0.2 177,345 + SM_b20158 0.82 +0.2 177,346 - SM_b20158 0.82 -0.1 177,346 - SM_b20158 0.82 +0.0 177,348 - SM_b20158 0.82 -0.7 177,752 + SM_b20159 0.17 -1.5 177,753 - SM_b20159 0.17 +0.2 177,777 + SM_b20159 0.19 +0.3 177,777 + SM_b20159 0.19 -0.2 177,778 - SM_b20159 0.20 -0.9 177,820 + SM_b20159 0.24 -0.3 177,821 - SM_b20159 0.24 -0.3 178,002 - SM_b20159 0.45 -0.1 178,338 - SM_b20159 0.83 -0.3 178,397 + SM_b20159 0.89 -2.4 178,612 - +0.6 178,740 + -1.5 178,810 - -0.2 178,866 + -1.2 178,869 + -0.5 178,869 + +0.3 178,870 - +0.5 178,870 - -0.0 178,870 - -0.5 178,897 + +0.9 178,897 + +0.1 178,917 + +0.3 178,918 - +0.3 179,000 - +0.9 179,000 - +0.2 179,088 + +0.3 179,089 - -0.2 179,089 - +0.6 179,089 - -0.6 179,089 - +0.2 179,089 - +0.6 179,089 - -0.4
Or see this region's nucleotide sequence