Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20137

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20136 and SM_b20137 are separated by 141 nucleotidesSM_b20137 and SM_b20138 are separated by 39 nucleotides SM_b20136: SM_b20136 - hypothetical protein, at 149,680 to 151,053 _b20136 SM_b20137: SM_b20137 - hypothetical protein, at 151,195 to 152,136 _b20137 SM_b20138: SM_b20138 - hypothetical protein, at 152,176 to 153,102 _b20138 Position (kb) 151 152 153Strain fitness (log2 ratio) -2 -1 0 1at 150.249 kb on - strand, within SM_b20136at 150.327 kb on - strand, within SM_b20136at 150.361 kb on + strand, within SM_b20136at 150.361 kb on + strand, within SM_b20136at 150.362 kb on - strand, within SM_b20136at 150.590 kb on + strand, within SM_b20136at 150.634 kb on + strand, within SM_b20136at 150.634 kb on + strand, within SM_b20136at 150.635 kb on - strand, within SM_b20136at 150.650 kb on + strandat 150.651 kb on - strand, within SM_b20136at 150.785 kb on + strand, within SM_b20136at 150.785 kb on + strand, within SM_b20136at 150.985 kb on + strandat 150.986 kb on - strandat 150.998 kb on + strandat 150.999 kb on - strandat 151.054 kb on - strandat 151.056 kb on + strandat 151.056 kb on + strandat 151.057 kb on - strandat 151.057 kb on - strandat 151.206 kb on + strandat 151.207 kb on - strandat 151.238 kb on + strandat 151.238 kb on + strandat 151.239 kb on - strandat 151.242 kb on + strandat 151.518 kb on - strand, within SM_b20137at 151.562 kb on + strand, within SM_b20137at 151.655 kb on + strand, within SM_b20137at 151.655 kb on + strand, within SM_b20137at 151.655 kb on + strand, within SM_b20137at 151.655 kb on + strand, within SM_b20137at 151.655 kb on + strandat 151.656 kb on - strand, within SM_b20137at 151.656 kb on - strand, within SM_b20137at 151.853 kb on + strand, within SM_b20137at 151.853 kb on + strand, within SM_b20137at 151.907 kb on + strand, within SM_b20137at 151.908 kb on - strand, within SM_b20137at 151.908 kb on - strand, within SM_b20137at 151.916 kb on + strand, within SM_b20137at 151.965 kb on + strand, within SM_b20137at 152.025 kb on + strand, within SM_b20137at 152.026 kb on - strand, within SM_b20137at 152.027 kb on + strand, within SM_b20137at 152.027 kb on + strand, within SM_b20137at 152.027 kb on + strand, within SM_b20137at 152.027 kb on + strand, within SM_b20137at 152.027 kb on + strand, within SM_b20137at 152.028 kb on - strand, within SM_b20137at 152.028 kb on - strand, within SM_b20137at 152.028 kb on - strand, within SM_b20137at 152.028 kb on - strand, within SM_b20137at 152.028 kb on - strand, within SM_b20137at 152.028 kb on - strand, within SM_b20137at 152.139 kb on + strandat 152.139 kb on + strandat 152.140 kb on - strandat 152.140 kb on - strandat 152.291 kb on + strand, within SM_b20138at 152.291 kb on + strand, within SM_b20138at 152.292 kb on - strand, within SM_b20138at 152.478 kb on - strand, within SM_b20138at 152.478 kb on - strand, within SM_b20138at 152.523 kb on - strand, within SM_b20138at 152.616 kb on - strand, within SM_b20138at 152.616 kb on - strand, within SM_b20138at 152.711 kb on + strand, within SM_b20138at 152.754 kb on - strand, within SM_b20138at 152.802 kb on - strand, within SM_b20138at 152.802 kb on - strand, within SM_b20138at 152.813 kb on + strandat 152.876 kb on + strand, within SM_b20138at 152.876 kb on + strand, within SM_b20138at 152.877 kb on - strand, within SM_b20138at 152.877 kb on - strand, within SM_b20138at 152.877 kb on - strand, within SM_b20138at 152.877 kb on - strand, within SM_b20138at 152.924 kb on + strand, within SM_b20138at 152.925 kb on - strand, within SM_b20138at 152.925 kb on - strand, within SM_b20138at 152.925 kb on - strand, within SM_b20138at 152.990 kb on + strand, within SM_b20138at 152.991 kb on - strand, within SM_b20138at 152.991 kb on - strand, within SM_b20138at 152.991 kb on - strand, within SM_b20138at 152.991 kb on - strand, within SM_b20138at 152.993 kb on + strand, within SM_b20138at 152.994 kb on - strand, within SM_b20138at 152.994 kb on - strand, within SM_b20138at 152.994 kb on - strand, within SM_b20138at 153.087 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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150,249 - SM_b20136 0.41 -0.1
150,327 - SM_b20136 0.47 +0.3
150,361 + SM_b20136 0.50 +0.2
150,361 + SM_b20136 0.50 -0.9
150,362 - SM_b20136 0.50 +0.5
150,590 + SM_b20136 0.66 -0.6
150,634 + SM_b20136 0.69 +0.8
150,634 + SM_b20136 0.69 +0.4
150,635 - SM_b20136 0.70 -1.2
150,650 + -0.6
150,651 - SM_b20136 0.71 -0.3
150,785 + SM_b20136 0.80 +0.2
150,785 + SM_b20136 0.80 +0.9
150,985 + +0.5
150,986 - -0.0
150,998 + +0.0
150,999 - -0.2
151,054 - +0.2
151,056 + -0.3
151,056 + +0.3
151,057 - +0.4
151,057 - -0.6
151,206 + -0.2
151,207 - -2.5
151,238 + +0.1
151,238 + -0.1
151,239 - +0.3
151,242 + +0.6
151,518 - SM_b20137 0.34 -0.4
151,562 + SM_b20137 0.39 -0.9
151,655 + SM_b20137 0.49 +0.1
151,655 + SM_b20137 0.49 -2.0
151,655 + SM_b20137 0.49 -0.0
151,655 + SM_b20137 0.49 +0.2
151,655 + -0.6
151,656 - SM_b20137 0.49 -0.5
151,656 - SM_b20137 0.49 -0.3
151,853 + SM_b20137 0.70 -0.3
151,853 + SM_b20137 0.70 -0.9
151,907 + SM_b20137 0.76 +0.1
151,908 - SM_b20137 0.76 +0.3
151,908 - SM_b20137 0.76 -1.3
151,916 + SM_b20137 0.77 +0.2
151,965 + SM_b20137 0.82 +0.2
152,025 + SM_b20137 0.88 -0.3
152,026 - SM_b20137 0.88 +1.1
152,027 + SM_b20137 0.88 -0.0
152,027 + SM_b20137 0.88 -0.1
152,027 + SM_b20137 0.88 -0.8
152,027 + SM_b20137 0.88 -0.8
152,027 + SM_b20137 0.88 -1.1
152,028 - SM_b20137 0.88 -0.3
152,028 - SM_b20137 0.88 +0.4
152,028 - SM_b20137 0.88 +0.3
152,028 - SM_b20137 0.88 +1.0
152,028 - SM_b20137 0.88 +1.4
152,028 - SM_b20137 0.88 -1.0
152,139 + -0.2
152,139 + +0.6
152,140 - -0.2
152,140 - +0.1
152,291 + SM_b20138 0.12 +0.0
152,291 + SM_b20138 0.12 -0.1
152,292 - SM_b20138 0.13 -0.2
152,478 - SM_b20138 0.33 +0.5
152,478 - SM_b20138 0.33 +0.2
152,523 - SM_b20138 0.37 -1.7
152,616 - SM_b20138 0.47 +0.2
152,616 - SM_b20138 0.47 +0.4
152,711 + SM_b20138 0.58 +0.0
152,754 - SM_b20138 0.62 -0.6
152,802 - SM_b20138 0.68 +0.5
152,802 - SM_b20138 0.68 -0.1
152,813 + -1.7
152,876 + SM_b20138 0.76 -0.0
152,876 + SM_b20138 0.76 +0.8
152,877 - SM_b20138 0.76 +1.4
152,877 - SM_b20138 0.76 +0.6
152,877 - SM_b20138 0.76 +1.0
152,877 - SM_b20138 0.76 -0.2
152,924 + SM_b20138 0.81 +0.2
152,925 - SM_b20138 0.81 +0.4
152,925 - SM_b20138 0.81 +1.4
152,925 - SM_b20138 0.81 -0.8
152,990 + SM_b20138 0.88 +0.6
152,991 - SM_b20138 0.88 -0.4
152,991 - SM_b20138 0.88 +0.1
152,991 - SM_b20138 0.88 -0.7
152,991 - SM_b20138 0.88 +0.1
152,993 + SM_b20138 0.88 +0.4
152,994 - SM_b20138 0.88 +1.3
152,994 - SM_b20138 0.88 +0.3
152,994 - SM_b20138 0.88 -0.9
153,087 + +0.1

Or see this region's nucleotide sequence