Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20084

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20082 and SM_b20083 are separated by 291 nucleotidesSM_b20083 and SM_b20084 are separated by 111 nucleotidesSM_b20084 and SM_b20085 are separated by 51 nucleotidesSM_b20085 and SM_b20086 are separated by 197 nucleotidesSM_b20086 and SM_b20087 are separated by 22 nucleotides SM_b20082: SM_b20082 - hypothetical protein, at 93,442 to 94,260 _b20082 SM_b20083: SM_b20083 - hypothetical protein, at 94,552 to 94,791 _b20083 SM_b20084: SM_b20084 - hypothetical protein, at 94,903 to 95,076 _b20084 SM_b20085: SM_b20085 - hypothetical protein, at 95,128 to 95,274 _b20085 SM_b20086: SM_b20086 - hypothetical protein, at 95,472 to 95,774 _b20086 SM_b20087: SM_b20087 - hypothetical protein, at 95,797 to 96,402 _b20087 Position (kb) 94 95 96Strain fitness (log2 ratio) -2 -1 0 1at 94.002 kb on - strand, within SM_b20082at 94.379 kb on - strandat 94.447 kb on - strandat 94.551 kb on + strandat 94.551 kb on + strandat 94.551 kb on + strandat 94.551 kb on + strandat 94.552 kb on - strandat 94.552 kb on - strandat 94.552 kb on - strandat 94.714 kb on + strand, within SM_b20083at 94.714 kb on + strand, within SM_b20083at 94.714 kb on + strand, within SM_b20083at 94.715 kb on - strand, within SM_b20083at 94.829 kb on + strandat 94.830 kb on - strandat 94.856 kb on - strandat 94.904 kb on + strandat 94.904 kb on + strandat 94.957 kb on - strand, within SM_b20084at 94.957 kb on - strand, within SM_b20084at 94.957 kb on - strand, within SM_b20084at 94.957 kb on - strand, within SM_b20084at 94.970 kb on + strand, within SM_b20084at 94.979 kb on - strand, within SM_b20084at 95.036 kb on - strand, within SM_b20084at 95.046 kb on + strand, within SM_b20084at 95.046 kb on + strand, within SM_b20084at 95.046 kb on + strand, within SM_b20084at 95.058 kb on + strand, within SM_b20084at 95.076 kb on + strandat 95.077 kb on - strandat 95.260 kb on + strandat 95.268 kb on + strandat 95.269 kb on - strandat 95.694 kb on - strand, within SM_b20086at 95.694 kb on - strand, within SM_b20086at 95.716 kb on - strand, within SM_b20086at 95.762 kb on - strandat 95.828 kb on - strandat 95.887 kb on - strand, within SM_b20087at 95.942 kb on + strand, within SM_b20087at 95.942 kb on + strand, within SM_b20087at 95.943 kb on - strand, within SM_b20087at 96.029 kb on + strand, within SM_b20087at 96.030 kb on - strand, within SM_b20087

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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94,002 - SM_b20082 0.68 +1.0
94,379 - +0.6
94,447 - +0.2
94,551 + -0.8
94,551 + -0.2
94,551 + -0.8
94,551 + +0.4
94,552 - +0.1
94,552 - +0.6
94,552 - +0.1
94,714 + SM_b20083 0.68 -0.8
94,714 + SM_b20083 0.68 -0.4
94,714 + SM_b20083 0.68 +0.2
94,715 - SM_b20083 0.68 +1.2
94,829 + -0.3
94,830 - +0.8
94,856 - +0.6
94,904 + -0.0
94,904 + -1.1
94,957 - SM_b20084 0.31 -0.1
94,957 - SM_b20084 0.31 +0.1
94,957 - SM_b20084 0.31 -0.1
94,957 - SM_b20084 0.31 +1.0
94,970 + SM_b20084 0.39 +0.5
94,979 - SM_b20084 0.44 +0.1
95,036 - SM_b20084 0.76 +0.8
95,046 + SM_b20084 0.82 +1.1
95,046 + SM_b20084 0.82 +0.6
95,046 + SM_b20084 0.82 +0.1
95,058 + SM_b20084 0.89 -0.4
95,076 + +0.0
95,077 - -0.1
95,260 + -0.3
95,268 + -0.2
95,269 - +0.2
95,694 - SM_b20086 0.73 -0.7
95,694 - SM_b20086 0.73 -2.0
95,716 - SM_b20086 0.81 -1.2
95,762 - +1.3
95,828 - +0.6
95,887 - SM_b20087 0.15 +0.7
95,942 + SM_b20087 0.24 -0.3
95,942 + SM_b20087 0.24 -0.4
95,943 - SM_b20087 0.24 +0.1
96,029 + SM_b20087 0.38 -0.6
96,030 - SM_b20087 0.38 -1.6

Or see this region's nucleotide sequence