Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00720 and CA265_RS00725 are separated by 41 nucleotides CA265_RS00725 and CA265_RS00730 are separated by 97 nucleotides
CA265_RS00720: CA265_RS00720 - hypothetical protein, at 168,786 to 170,468
_RS00720
CA265_RS00725: CA265_RS00725 - hypothetical protein, at 170,510 to 173,620
_RS00725
CA265_RS00730: CA265_RS00730 - hypothetical protein, at 173,718 to 175,469
_RS00730
Position (kb) 170
171
172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 169.547 kb on - strand, within CA265_RS00720 at 169.583 kb on + strand, within CA265_RS00720 at 169.682 kb on + strand, within CA265_RS00720 at 169.682 kb on + strand, within CA265_RS00720 at 169.683 kb on - strand, within CA265_RS00720 at 169.689 kb on - strand, within CA265_RS00720 at 169.789 kb on - strand, within CA265_RS00720 at 169.789 kb on - strand, within CA265_RS00720 at 169.790 kb on + strand, within CA265_RS00720 at 169.790 kb on + strand, within CA265_RS00720 at 169.806 kb on + strand, within CA265_RS00720 at 169.873 kb on + strand, within CA265_RS00720 at 169.885 kb on - strand, within CA265_RS00720 at 169.918 kb on + strand, within CA265_RS00720 at 169.944 kb on + strand, within CA265_RS00720 at 169.944 kb on + strand, within CA265_RS00720 at 170.025 kb on + strand, within CA265_RS00720 at 170.265 kb on - strand, within CA265_RS00720 at 170.266 kb on + strand, within CA265_RS00720 at 170.266 kb on + strand, within CA265_RS00720 at 170.267 kb on - strand, within CA265_RS00720 at 170.267 kb on - strand, within CA265_RS00720 at 170.267 kb on - strand, within CA265_RS00720 at 170.267 kb on - strand, within CA265_RS00720 at 170.276 kb on + strand, within CA265_RS00720 at 170.352 kb on + strand at 170.353 kb on - strand at 170.401 kb on - strand at 170.401 kb on - strand at 170.503 kb on - strand at 170.503 kb on - strand at 170.510 kb on - strand at 170.523 kb on + strand at 170.532 kb on + strand at 170.532 kb on + strand at 170.584 kb on + strand at 170.585 kb on - strand at 170.596 kb on - strand at 170.626 kb on + strand at 170.646 kb on + strand at 170.719 kb on + strand at 170.725 kb on + strand at 170.726 kb on - strand at 170.778 kb on + strand at 170.778 kb on + strand at 170.790 kb on + strand at 170.800 kb on + strand at 170.927 kb on - strand, within CA265_RS00725 at 171.019 kb on + strand, within CA265_RS00725 at 171.023 kb on + strand, within CA265_RS00725 at 171.024 kb on - strand, within CA265_RS00725 at 171.024 kb on - strand, within CA265_RS00725 at 171.034 kb on + strand, within CA265_RS00725 at 171.046 kb on - strand, within CA265_RS00725 at 171.075 kb on - strand, within CA265_RS00725 at 171.075 kb on - strand, within CA265_RS00725 at 171.075 kb on - strand, within CA265_RS00725 at 171.160 kb on + strand, within CA265_RS00725 at 171.193 kb on + strand, within CA265_RS00725 at 171.340 kb on + strand, within CA265_RS00725 at 171.341 kb on - strand, within CA265_RS00725 at 171.445 kb on + strand, within CA265_RS00725 at 171.452 kb on - strand, within CA265_RS00725 at 171.452 kb on - strand, within CA265_RS00725 at 171.452 kb on - strand, within CA265_RS00725 at 171.482 kb on - strand, within CA265_RS00725 at 171.482 kb on - strand, within CA265_RS00725 at 171.516 kb on - strand, within CA265_RS00725 at 171.538 kb on - strand, within CA265_RS00725 at 171.538 kb on - strand, within CA265_RS00725 at 171.538 kb on - strand, within CA265_RS00725 at 171.582 kb on - strand, within CA265_RS00725 at 171.593 kb on - strand, within CA265_RS00725 at 171.634 kb on - strand, within CA265_RS00725 at 171.634 kb on - strand, within CA265_RS00725 at 171.638 kb on - strand, within CA265_RS00725 at 171.652 kb on - strand, within CA265_RS00725 at 171.707 kb on + strand, within CA265_RS00725 at 171.708 kb on - strand, within CA265_RS00725 at 171.710 kb on + strand, within CA265_RS00725 at 171.759 kb on + strand, within CA265_RS00725 at 171.806 kb on + strand, within CA265_RS00725 at 171.807 kb on - strand, within CA265_RS00725 at 171.820 kb on - strand, within CA265_RS00725 at 171.866 kb on + strand, within CA265_RS00725 at 171.896 kb on - strand, within CA265_RS00725 at 171.954 kb on + strand, within CA265_RS00725 at 171.954 kb on + strand, within CA265_RS00725 at 171.955 kb on - strand, within CA265_RS00725 at 171.955 kb on - strand, within CA265_RS00725 at 171.958 kb on - strand, within CA265_RS00725 at 171.961 kb on - strand, within CA265_RS00725 at 171.961 kb on - strand, within CA265_RS00725 at 171.990 kb on + strand, within CA265_RS00725 at 171.990 kb on + strand, within CA265_RS00725 at 171.991 kb on - strand, within CA265_RS00725 at 171.991 kb on - strand, within CA265_RS00725 at 171.991 kb on - strand, within CA265_RS00725 at 171.991 kb on - strand, within CA265_RS00725 at 172.011 kb on + strand, within CA265_RS00725 at 172.017 kb on - strand, within CA265_RS00725 at 172.019 kb on + strand, within CA265_RS00725 at 172.020 kb on - strand, within CA265_RS00725 at 172.056 kb on + strand, within CA265_RS00725 at 172.056 kb on + strand, within CA265_RS00725 at 172.071 kb on - strand, within CA265_RS00725 at 172.097 kb on + strand, within CA265_RS00725 at 172.105 kb on + strand, within CA265_RS00725 at 172.105 kb on + strand, within CA265_RS00725 at 172.106 kb on - strand, within CA265_RS00725 at 172.125 kb on + strand, within CA265_RS00725 at 172.125 kb on + strand, within CA265_RS00725 at 172.126 kb on - strand, within CA265_RS00725 at 172.130 kb on - strand, within CA265_RS00725 at 172.176 kb on + strand, within CA265_RS00725 at 172.193 kb on + strand, within CA265_RS00725 at 172.193 kb on + strand, within CA265_RS00725 at 172.223 kb on - strand, within CA265_RS00725 at 172.225 kb on + strand, within CA265_RS00725 at 172.225 kb on + strand, within CA265_RS00725 at 172.226 kb on - strand, within CA265_RS00725 at 172.292 kb on + strand, within CA265_RS00725 at 172.355 kb on - strand, within CA265_RS00725 at 172.433 kb on - strand, within CA265_RS00725 at 172.472 kb on + strand, within CA265_RS00725 at 172.473 kb on - strand, within CA265_RS00725 at 172.478 kb on - strand, within CA265_RS00725 at 172.478 kb on - strand, within CA265_RS00725 at 172.528 kb on + strand, within CA265_RS00725 at 172.529 kb on - strand, within CA265_RS00725 at 172.529 kb on - strand, within CA265_RS00725 at 172.567 kb on + strand, within CA265_RS00725 at 172.594 kb on + strand, within CA265_RS00725 at 172.615 kb on - strand, within CA265_RS00725 at 172.666 kb on + strand, within CA265_RS00725 at 172.792 kb on + strand, within CA265_RS00725 at 172.792 kb on + strand, within CA265_RS00725 at 172.820 kb on + strand, within CA265_RS00725 at 172.821 kb on - strand, within CA265_RS00725 at 172.933 kb on + strand, within CA265_RS00725 at 173.198 kb on + strand, within CA265_RS00725 at 173.207 kb on - strand, within CA265_RS00725 at 173.207 kb on - strand, within CA265_RS00725 at 173.207 kb on - strand, within CA265_RS00725 at 173.207 kb on - strand, within CA265_RS00725 at 173.296 kb on + strand, within CA265_RS00725 at 173.296 kb on + strand, within CA265_RS00725 at 173.297 kb on - strand, within CA265_RS00725 at 173.302 kb on + strand, within CA265_RS00725 at 173.387 kb on + strand at 173.387 kb on + strand at 173.390 kb on + strand at 173.390 kb on + strand at 173.473 kb on - strand at 173.530 kb on - strand at 173.563 kb on - strand at 173.594 kb on - strand at 173.611 kb on + strand at 173.611 kb on + strand at 173.673 kb on - strand at 173.683 kb on + strand at 173.756 kb on + strand at 173.791 kb on + strand at 173.813 kb on + strand at 173.832 kb on - strand at 173.846 kb on + strand at 173.848 kb on + strand at 173.848 kb on + strand at 173.848 kb on + strand at 173.849 kb on - strand at 173.849 kb on - strand at 173.849 kb on - strand at 173.849 kb on - strand at 173.877 kb on + strand at 173.878 kb on - strand at 173.964 kb on + strand, within CA265_RS00730 at 174.068 kb on + strand, within CA265_RS00730 at 174.069 kb on - strand, within CA265_RS00730 at 174.080 kb on - strand, within CA265_RS00730 at 174.086 kb on - strand, within CA265_RS00730 at 174.086 kb on - strand, within CA265_RS00730 at 174.098 kb on + strand, within CA265_RS00730 at 174.098 kb on + strand, within CA265_RS00730 at 174.157 kb on - strand, within CA265_RS00730 at 174.174 kb on + strand, within CA265_RS00730 at 174.205 kb on + strand at 174.206 kb on - strand, within CA265_RS00730 at 174.234 kb on - strand, within CA265_RS00730 at 174.280 kb on + strand, within CA265_RS00730 at 174.281 kb on - strand, within CA265_RS00730 at 174.286 kb on - strand, within CA265_RS00730 at 174.344 kb on - strand, within CA265_RS00730 at 174.371 kb on + strand, within CA265_RS00730 at 174.372 kb on - strand, within CA265_RS00730 at 174.372 kb on - strand, within CA265_RS00730 at 174.413 kb on - strand, within CA265_RS00730 at 174.417 kb on + strand, within CA265_RS00730 at 174.496 kb on - strand, within CA265_RS00730 at 174.567 kb on + strand, within CA265_RS00730 at 174.568 kb on - strand, within CA265_RS00730 at 174.571 kb on + strand, within CA265_RS00730 at 174.576 kb on - strand, within CA265_RS00730
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 169,547 - CA265_RS00720 0.45 +0.9 169,583 + CA265_RS00720 0.47 +0.2 169,682 + CA265_RS00720 0.53 +1.0 169,682 + CA265_RS00720 0.53 -1.9 169,683 - CA265_RS00720 0.53 -0.8 169,689 - CA265_RS00720 0.54 -0.2 169,789 - CA265_RS00720 0.60 -2.6 169,789 - CA265_RS00720 0.60 -0.1 169,790 + CA265_RS00720 0.60 +0.4 169,790 + CA265_RS00720 0.60 -0.1 169,806 + CA265_RS00720 0.61 +2.0 169,873 + CA265_RS00720 0.65 +1.4 169,885 - CA265_RS00720 0.65 +1.7 169,918 + CA265_RS00720 0.67 -0.2 169,944 + CA265_RS00720 0.69 +0.3 169,944 + CA265_RS00720 0.69 -0.4 170,025 + CA265_RS00720 0.74 +0.9 170,265 - CA265_RS00720 0.88 -0.2 170,266 + CA265_RS00720 0.88 -2.0 170,266 + CA265_RS00720 0.88 +0.6 170,267 - CA265_RS00720 0.88 +0.5 170,267 - CA265_RS00720 0.88 +0.7 170,267 - CA265_RS00720 0.88 -0.0 170,267 - CA265_RS00720 0.88 -0.6 170,276 + CA265_RS00720 0.89 +0.4 170,352 + +1.4 170,353 - +0.7 170,401 - -1.1 170,401 - +0.9 170,503 - +0.5 170,503 - +0.3 170,510 - +0.5 170,523 + -0.5 170,532 + -2.5 170,532 + -0.3 170,584 + -0.2 170,585 - -0.0 170,596 - -0.8 170,626 + +2.0 170,646 + +0.0 170,719 + -2.1 170,725 + -1.9 170,726 - +0.1 170,778 + +1.1 170,778 + -1.7 170,790 + +2.0 170,800 + -0.7 170,927 - CA265_RS00725 0.13 +0.3 171,019 + CA265_RS00725 0.16 -0.2 171,023 + CA265_RS00725 0.16 -0.5 171,024 - CA265_RS00725 0.17 +0.3 171,024 - CA265_RS00725 0.17 +0.1 171,034 + CA265_RS00725 0.17 -1.3 171,046 - CA265_RS00725 0.17 +0.1 171,075 - CA265_RS00725 0.18 +0.7 171,075 - CA265_RS00725 0.18 +2.5 171,075 - CA265_RS00725 0.18 +0.2 171,160 + CA265_RS00725 0.21 -1.6 171,193 + CA265_RS00725 0.22 +0.1 171,340 + CA265_RS00725 0.27 +1.0 171,341 - CA265_RS00725 0.27 -0.0 171,445 + CA265_RS00725 0.30 +0.3 171,452 - CA265_RS00725 0.30 +0.4 171,452 - CA265_RS00725 0.30 -1.2 171,452 - CA265_RS00725 0.30 -1.5 171,482 - CA265_RS00725 0.31 -0.0 171,482 - CA265_RS00725 0.31 +0.3 171,516 - CA265_RS00725 0.32 -0.6 171,538 - CA265_RS00725 0.33 -0.3 171,538 - CA265_RS00725 0.33 -1.3 171,538 - CA265_RS00725 0.33 -0.1 171,582 - CA265_RS00725 0.34 +0.2 171,593 - CA265_RS00725 0.35 -0.6 171,634 - CA265_RS00725 0.36 -3.6 171,634 - CA265_RS00725 0.36 +1.4 171,638 - CA265_RS00725 0.36 -0.5 171,652 - CA265_RS00725 0.37 -1.5 171,707 + CA265_RS00725 0.38 +0.6 171,708 - CA265_RS00725 0.39 -1.6 171,710 + CA265_RS00725 0.39 +0.2 171,759 + CA265_RS00725 0.40 +0.9 171,806 + CA265_RS00725 0.42 +0.0 171,807 - CA265_RS00725 0.42 +0.6 171,820 - CA265_RS00725 0.42 +0.2 171,866 + CA265_RS00725 0.44 -0.5 171,896 - CA265_RS00725 0.45 -0.9 171,954 + CA265_RS00725 0.46 +0.0 171,954 + CA265_RS00725 0.46 +0.8 171,955 - CA265_RS00725 0.46 -0.6 171,955 - CA265_RS00725 0.46 -0.3 171,958 - CA265_RS00725 0.47 -0.5 171,961 - CA265_RS00725 0.47 -0.3 171,961 - CA265_RS00725 0.47 +0.4 171,990 + CA265_RS00725 0.48 -0.1 171,990 + CA265_RS00725 0.48 +0.3 171,991 - CA265_RS00725 0.48 -0.2 171,991 - CA265_RS00725 0.48 +0.7 171,991 - CA265_RS00725 0.48 -0.4 171,991 - CA265_RS00725 0.48 +1.3 172,011 + CA265_RS00725 0.48 +0.8 172,017 - CA265_RS00725 0.48 +0.4 172,019 + CA265_RS00725 0.49 -0.8 172,020 - CA265_RS00725 0.49 +0.5 172,056 + CA265_RS00725 0.50 -1.7 172,056 + CA265_RS00725 0.50 +0.8 172,071 - CA265_RS00725 0.50 -0.3 172,097 + CA265_RS00725 0.51 -0.3 172,105 + CA265_RS00725 0.51 -1.2 172,105 + CA265_RS00725 0.51 -0.1 172,106 - CA265_RS00725 0.51 -2.0 172,125 + CA265_RS00725 0.52 -0.0 172,125 + CA265_RS00725 0.52 -0.1 172,126 - CA265_RS00725 0.52 -0.7 172,130 - CA265_RS00725 0.52 -0.6 172,176 + CA265_RS00725 0.54 +1.0 172,193 + CA265_RS00725 0.54 +0.8 172,193 + CA265_RS00725 0.54 -0.5 172,223 - CA265_RS00725 0.55 -1.0 172,225 + CA265_RS00725 0.55 +0.1 172,225 + CA265_RS00725 0.55 -0.6 172,226 - CA265_RS00725 0.55 -0.0 172,292 + CA265_RS00725 0.57 -0.6 172,355 - CA265_RS00725 0.59 +0.7 172,433 - CA265_RS00725 0.62 -1.2 172,472 + CA265_RS00725 0.63 -1.6 172,473 - CA265_RS00725 0.63 +0.6 172,478 - CA265_RS00725 0.63 -0.6 172,478 - CA265_RS00725 0.63 +0.3 172,528 + CA265_RS00725 0.65 -0.6 172,529 - CA265_RS00725 0.65 -0.9 172,529 - CA265_RS00725 0.65 -0.6 172,567 + CA265_RS00725 0.66 -0.0 172,594 + CA265_RS00725 0.67 +1.8 172,615 - CA265_RS00725 0.68 +0.1 172,666 + CA265_RS00725 0.69 -1.0 172,792 + CA265_RS00725 0.73 -1.2 172,792 + CA265_RS00725 0.73 -0.0 172,820 + CA265_RS00725 0.74 +0.5 172,821 - CA265_RS00725 0.74 -0.4 172,933 + CA265_RS00725 0.78 -0.3 173,198 + CA265_RS00725 0.86 -0.6 173,207 - CA265_RS00725 0.87 -0.9 173,207 - CA265_RS00725 0.87 +2.1 173,207 - CA265_RS00725 0.87 +0.7 173,207 - CA265_RS00725 0.87 -0.9 173,296 + CA265_RS00725 0.90 +1.7 173,296 + CA265_RS00725 0.90 -2.5 173,297 - CA265_RS00725 0.90 +0.3 173,302 + CA265_RS00725 0.90 -0.4 173,387 + +1.6 173,387 + +1.4 173,390 + +0.5 173,390 + -0.3 173,473 - -0.1 173,530 - -0.4 173,563 - -0.1 173,594 - +0.1 173,611 + +0.9 173,611 + +0.3 173,673 - -0.6 173,683 + -0.0 173,756 + -0.2 173,791 + +0.1 173,813 + -0.7 173,832 - +0.1 173,846 + -0.2 173,848 + +0.1 173,848 + +1.0 173,848 + -0.1 173,849 - -0.7 173,849 - -1.3 173,849 - -0.2 173,849 - +0.3 173,877 + +1.7 173,878 - -0.2 173,964 + CA265_RS00730 0.14 -0.9 174,068 + CA265_RS00730 0.20 +0.2 174,069 - CA265_RS00730 0.20 +1.0 174,080 - CA265_RS00730 0.21 +0.1 174,086 - CA265_RS00730 0.21 -0.6 174,086 - CA265_RS00730 0.21 +0.7 174,098 + CA265_RS00730 0.22 -0.4 174,098 + CA265_RS00730 0.22 -0.3 174,157 - CA265_RS00730 0.25 -0.5 174,174 + CA265_RS00730 0.26 +0.8 174,205 + -0.6 174,206 - CA265_RS00730 0.28 +1.4 174,234 - CA265_RS00730 0.29 -1.7 174,280 + CA265_RS00730 0.32 +0.6 174,281 - CA265_RS00730 0.32 +0.3 174,286 - CA265_RS00730 0.32 +0.3 174,344 - CA265_RS00730 0.36 -0.1 174,371 + CA265_RS00730 0.37 +0.9 174,372 - CA265_RS00730 0.37 -0.1 174,372 - CA265_RS00730 0.37 -0.0 174,413 - CA265_RS00730 0.40 -0.4 174,417 + CA265_RS00730 0.40 -0.3 174,496 - CA265_RS00730 0.44 -1.1 174,567 + CA265_RS00730 0.48 -1.2 174,568 - CA265_RS00730 0.49 -0.0 174,571 + CA265_RS00730 0.49 +1.1 174,576 - CA265_RS00730 0.49 +1.3
Or see this region's nucleotide sequence