Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20785

Experiment: CDM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13560 and BBR_RS13565 are separated by 7 nucleotidesBBR_RS13565 and BBR_RS20785 are separated by 299 nucleotidesBBR_RS20785 and BBR_RS13575 are separated by 39 nucleotidesBBR_RS13575 and BBR_RS13580 are separated by 9 nucleotides BBR_RS13560: BBR_RS13560 - MATE family efflux transporter, at 814,983 to 816,341 _RS13560 BBR_RS13565: BBR_RS13565 - DNA-(apurinic or apyrimidinic site) lyase endonuclease III base excision repair, at 816,349 to 817,041 _RS13565 BBR_RS20785: BBR_RS20785 - PadR family transcriptional regulator, at 817,341 to 817,487 _RS20785 BBR_RS13575: BBR_RS13575 - sugar O-acetyltransferase, at 817,527 to 818,201 _RS13575 BBR_RS13580: BBR_RS13580 - nodulation protein L, at 818,211 to 818,474 _RS13580 Position (kb) 817 818Strain fitness (log2 ratio) -3 -2 -1 0 1at 816.381 kb on + strandat 816.420 kb on + strand, within BBR_RS13565at 816.420 kb on + strand, within BBR_RS13565at 816.447 kb on - strand, within BBR_RS13565at 816.448 kb on - strand, within BBR_RS13565at 816.448 kb on - strand, within BBR_RS13565at 816.462 kb on - strand, within BBR_RS13565at 816.462 kb on - strand, within BBR_RS13565at 816.525 kb on - strand, within BBR_RS13565at 816.534 kb on - strand, within BBR_RS13565at 816.549 kb on + strand, within BBR_RS13565at 816.567 kb on + strand, within BBR_RS13565at 816.569 kb on - strand, within BBR_RS13565at 816.607 kb on - strand, within BBR_RS13565at 816.632 kb on + strand, within BBR_RS13565at 816.640 kb on - strand, within BBR_RS13565at 816.663 kb on + strand, within BBR_RS13565at 816.666 kb on - strand, within BBR_RS13565at 816.685 kb on - strand, within BBR_RS13565at 816.687 kb on + strand, within BBR_RS13565at 816.704 kb on - strand, within BBR_RS13565at 816.787 kb on + strand, within BBR_RS13565at 816.855 kb on - strand, within BBR_RS13565at 816.894 kb on + strand, within BBR_RS13565at 817.078 kb on + strandat 817.226 kb on + strandat 817.226 kb on + strandat 817.226 kb on + strandat 817.226 kb on + strandat 817.313 kb on - strandat 817.371 kb on - strand, within BBR_RS20785at 817.371 kb on - strand, within BBR_RS20785at 817.603 kb on + strand, within BBR_RS13575at 817.700 kb on - strand, within BBR_RS13575at 817.755 kb on + strand, within BBR_RS13575at 817.755 kb on + strand, within BBR_RS13575at 817.763 kb on - strand, within BBR_RS13575at 817.793 kb on + strand, within BBR_RS13575at 817.810 kb on - strand, within BBR_RS13575at 817.852 kb on - strand, within BBR_RS13575at 817.852 kb on - strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.968 kb on + strand, within BBR_RS13575at 817.998 kb on - strand, within BBR_RS13575at 818.028 kb on + strand, within BBR_RS13575at 818.043 kb on + strand, within BBR_RS13575at 818.116 kb on - strand, within BBR_RS13575at 818.116 kb on - strand, within BBR_RS13575at 818.163 kb on + strandat 818.191 kb on + strandat 818.191 kb on + strandat 818.201 kb on - strandat 818.299 kb on - strand, within BBR_RS13580at 818.317 kb on + strand, within BBR_RS13580at 818.317 kb on + strand, within BBR_RS13580at 818.319 kb on + strand, within BBR_RS13580at 818.336 kb on - strand, within BBR_RS13580at 818.401 kb on - strand, within BBR_RS13580at 818.407 kb on + strand, within BBR_RS13580at 818.424 kb on + strand, within BBR_RS13580at 818.429 kb on + strand, within BBR_RS13580at 818.443 kb on + strand, within BBR_RS13580at 818.447 kb on + strand, within BBR_RS13580at 818.451 kb on - strandat 818.451 kb on - strandat 818.475 kb on - strandat 818.475 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1
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816,381 + -1.1
816,420 + BBR_RS13565 0.10 -0.5
816,420 + BBR_RS13565 0.10 -0.9
816,447 - BBR_RS13565 0.14 -0.4
816,448 - BBR_RS13565 0.14 -0.3
816,448 - BBR_RS13565 0.14 -1.8
816,462 - BBR_RS13565 0.16 +0.0
816,462 - BBR_RS13565 0.16 -1.1
816,525 - BBR_RS13565 0.25 +0.1
816,534 - BBR_RS13565 0.27 -0.0
816,549 + BBR_RS13565 0.29 -0.4
816,567 + BBR_RS13565 0.31 -0.3
816,569 - BBR_RS13565 0.32 -0.2
816,607 - BBR_RS13565 0.37 -0.7
816,632 + BBR_RS13565 0.41 -0.5
816,640 - BBR_RS13565 0.42 +1.0
816,663 + BBR_RS13565 0.45 +0.6
816,666 - BBR_RS13565 0.46 -0.8
816,685 - BBR_RS13565 0.48 +1.0
816,687 + BBR_RS13565 0.49 +1.0
816,704 - BBR_RS13565 0.51 +1.0
816,787 + BBR_RS13565 0.63 -1.1
816,855 - BBR_RS13565 0.73 -0.8
816,894 + BBR_RS13565 0.79 -0.8
817,078 + +0.6
817,226 + +0.9
817,226 + -0.8
817,226 + -0.3
817,226 + -1.2
817,313 - -1.3
817,371 - BBR_RS20785 0.20 -3.1
817,371 - BBR_RS20785 0.20 -1.6
817,603 + BBR_RS13575 0.11 +1.0
817,700 - BBR_RS13575 0.26 -2.7
817,755 + BBR_RS13575 0.34 -0.1
817,755 + BBR_RS13575 0.34 -2.4
817,763 - BBR_RS13575 0.35 -0.1
817,793 + BBR_RS13575 0.39 -0.0
817,810 - BBR_RS13575 0.42 +0.7
817,852 - BBR_RS13575 0.48 -1.1
817,852 - BBR_RS13575 0.48 +0.4
817,927 + BBR_RS13575 0.59 -0.3
817,927 + BBR_RS13575 0.59 -1.7
817,927 + BBR_RS13575 0.59 -0.1
817,927 + BBR_RS13575 0.59 +0.1
817,927 + BBR_RS13575 0.59 +0.8
817,927 + BBR_RS13575 0.59 +0.3
817,927 + BBR_RS13575 0.59 -2.0
817,968 + BBR_RS13575 0.65 -1.5
817,998 - BBR_RS13575 0.70 -1.6
818,028 + BBR_RS13575 0.74 +0.3
818,043 + BBR_RS13575 0.76 -0.4
818,116 - BBR_RS13575 0.87 -1.0
818,116 - BBR_RS13575 0.87 -0.2
818,163 + -0.6
818,191 + +0.1
818,191 + +0.7
818,201 - -0.1
818,299 - BBR_RS13580 0.33 -2.3
818,317 + BBR_RS13580 0.40 -0.2
818,317 + BBR_RS13580 0.40 +0.0
818,319 + BBR_RS13580 0.41 +0.1
818,336 - BBR_RS13580 0.47 -2.4
818,401 - BBR_RS13580 0.72 -0.0
818,407 + BBR_RS13580 0.74 +0.3
818,424 + BBR_RS13580 0.81 -2.6
818,429 + BBR_RS13580 0.83 -1.0
818,443 + BBR_RS13580 0.88 +0.6
818,447 + BBR_RS13580 0.89 +0.9
818,451 - +0.1
818,451 - +0.5
818,475 - +1.1
818,475 - -0.1

Or see this region's nucleotide sequence