Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17345

Experiment: CDM1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1
1,668,358	-		BBR_RS17340	0.18	-0.0
1,668,367	-		BBR_RS17340	0.19	+0.2
1,668,487	-		BBR_RS17340	0.30	+0.2
1,668,526	-		BBR_RS17340	0.33	-0.3
1,668,556	+		BBR_RS17340	0.36	-0.3
1,668,564	-		BBR_RS17340	0.37	+0.3
1,668,564	-		BBR_RS17340	0.37	+1.2
1,668,564	-		BBR_RS17340	0.37	+0.3
1,668,566	+		BBR_RS17340	0.37	-0.4
1,668,566	+		BBR_RS17340	0.37	-1.1
1,668,580	+		BBR_RS17340	0.38	-0.2
1,668,585	-		BBR_RS17340	0.39	+0.8
1,668,585	-		BBR_RS17340	0.39	-0.2
1,668,621	+		BBR_RS17340	0.42	-1.1
1,668,651	-		BBR_RS17340	0.45	-1.0
1,668,739	-		BBR_RS17340	0.53	-0.8
1,668,747	+		BBR_RS17340	0.54	-0.4
1,668,785	+		BBR_RS17340	0.57	+0.3
1,668,794	-		BBR_RS17340	0.58	+1.0
1,668,825	+		BBR_RS17340	0.61	-0.5
1,668,825	+		BBR_RS17340	0.61	+0.4
1,668,827	+		BBR_RS17340	0.61	+0.1
1,668,887	+		BBR_RS17340	0.67	-1.9
1,668,895	-		BBR_RS17340	0.68	-0.8
1,668,895	-		BBR_RS17340	0.68	-0.7
1,668,925	-		BBR_RS17340	0.70	+0.1
1,668,944	+		BBR_RS17340	0.72	+1.8
1,669,002	+		BBR_RS17340	0.78	+0.0
1,669,009	+		BBR_RS17340	0.78	+1.0
1,669,009	+		BBR_RS17340	0.78	+1.0
1,669,011	+		BBR_RS17340	0.78	-0.8
1,669,012	-		BBR_RS17340	0.79	-1.2
1,669,012	-		BBR_RS17340	0.79	+0.5
1,669,019	-		BBR_RS17340	0.79	-0.7
1,669,143	+				-0.7
1,669,144	+				-3.2
1,669,152	-				-1.0
1,669,152	-				+0.5
1,669,152	-				+0.6
1,669,186	+				-1.4
1,669,233	-				+0.4
1,669,239	-				+0.6
1,669,257	-				-1.3
1,669,288	-				-2.8
1,669,298	+				+0.6
1,669,299	+				+0.3
1,669,300	-				-1.0
1,669,301	+				+0.0
1,669,309	-				-2.4
1,669,310	-				-0.5
1,669,310	-				-0.8
1,669,325	+				-0.8
1,669,364	+				-0.4
1,669,364	+				-0.9
1,669,370	+				-0.9
1,669,379	-				+0.6
1,669,381	+				-0.1
1,669,381	+				-2.5
1,669,430	-				-0.9
1,669,450	-		BBR_RS17345	0.10	-0.3
1,669,450	-		BBR_RS17345	0.10	+0.0
1,669,462	+		BBR_RS17345	0.11	-1.1
1,669,536	-		BBR_RS17345	0.16	-1.0
1,669,596	+		BBR_RS17345	0.20	-1.0
1,669,619	+		BBR_RS17345	0.21	-0.4
1,669,627	-		BBR_RS17345	0.22	-0.7
1,669,627	-		BBR_RS17345	0.22	+0.2
1,669,627	-		BBR_RS17345	0.22	+0.0
1,669,642	-		BBR_RS17345	0.23	+0.3
1,669,642	-		BBR_RS17345	0.23	-0.9
1,669,669	+		BBR_RS17345	0.25	-0.1
1,669,669	+		BBR_RS17345	0.25	-0.1
1,669,672	-		BBR_RS17345	0.25	-0.1
1,669,677	-		BBR_RS17345	0.25	+0.5
1,669,753	+		BBR_RS17345	0.30	-0.1
1,669,761	-		BBR_RS17345	0.31	-0.2
1,669,781	+		BBR_RS17345	0.32	-1.7
1,669,781	+		BBR_RS17345	0.32	-1.3
1,669,781	+		BBR_RS17345	0.32	-0.3
1,669,781	+		BBR_RS17345	0.32	+0.2
1,669,789	-		BBR_RS17345	0.33	-1.2
1,669,789	-		BBR_RS17345	0.33	+0.7
1,669,823	-		BBR_RS17345	0.35	-0.3
1,669,824	+		BBR_RS17345	0.35	-0.2
1,669,865	-		BBR_RS17345	0.38	-0.9
1,669,865	-		BBR_RS17345	0.38	-0.8
1,669,912	+		BBR_RS17345	0.41	-0.9
1,669,920	-		BBR_RS17345	0.42	-0.7
1,669,932	+		BBR_RS17345	0.43	-2.3
1,669,944	+		BBR_RS17345	0.43	-1.5
1,669,944	+		BBR_RS17345	0.43	-1.1
1,669,958	-		BBR_RS17345	0.44	-0.9
1,669,971	+		BBR_RS17345	0.45	-0.8
1,669,979	-		BBR_RS17345	0.46	-0.8
1,669,979	-		BBR_RS17345	0.46	+0.8
1,669,979	-		BBR_RS17345	0.46	-2.3
1,670,000	-		BBR_RS17345	0.47	-0.4
1,670,002	+		BBR_RS17345	0.47	-0.7
1,670,002	+		BBR_RS17345	0.47	-0.0
1,670,002	+		BBR_RS17345	0.47	-1.7
1,670,002	+		BBR_RS17345	0.47	+0.2
1,670,012	+		BBR_RS17345	0.48	-0.0
1,670,075	+		BBR_RS17345	0.52	-1.0
1,670,075	+		BBR_RS17345	0.52	-0.9
1,670,083	-		BBR_RS17345	0.53	-0.7
1,670,084	-		BBR_RS17345	0.53	-1.0
1,670,120	-		BBR_RS17345	0.55	-3.6
1,670,131	-		BBR_RS17345	0.56	-1.3
1,670,167	-		BBR_RS17345	0.58	-0.5
1,670,167	-		BBR_RS17345	0.58	-2.1
1,670,167	-		BBR_RS17345	0.58	-0.6
1,670,226	+		BBR_RS17345	0.62	-1.4
1,670,228	+		BBR_RS17345	0.63	+1.6
1,670,254	-		BBR_RS17345	0.64	+0.3
1,670,259	-		BBR_RS17345	0.65	-0.3
1,670,280	+		BBR_RS17345	0.66	+1.0
1,670,283	-		BBR_RS17345	0.66	+1.5
1,670,298	+		BBR_RS17345	0.67	-1.8
1,670,306	-		BBR_RS17345	0.68	-0.2
1,670,318	+		BBR_RS17345	0.69	-0.7
1,670,346	-		BBR_RS17345	0.71	-2.3
1,670,370	+		BBR_RS17345	0.72	-0.9
1,670,376	-		BBR_RS17345	0.73	+0.6
1,670,388	+		BBR_RS17345	0.73	+0.5
1,670,398	-		BBR_RS17345	0.74	+0.8
1,670,484	+		BBR_RS17345	0.80	-1.8
1,670,497	-		BBR_RS17345	0.81	-1.8
1,670,497	-		BBR_RS17345	0.81	-2.2
1,670,507	+		BBR_RS17345	0.81	-0.6
1,670,557	-		BBR_RS17345	0.85	+1.5
1,670,558	+		BBR_RS17345	0.85	-2.1
1,670,581	+		BBR_RS17345	0.86	-0.8
1,670,609	-		BBR_RS17345	0.88	-0.9
1,670,686	+				-1.6
1,670,686	+				-1.5
1,670,704	-				+0.2
1,670,707	+				+0.3
1,670,707	+				-0.1
1,670,785	-				+0.2
1,670,787	+				-1.3
1,670,822	-				-3.7
1,670,835	-				-0.5
1,671,013	+				-2.0
1,671,051	-				+0.4
1,671,098	+				-1.5
1,671,098	+				-1.2
1,671,098	+				+0.2
1,671,147	+		BBR_RS17350	0.13	+0.6
1,671,152	+		BBR_RS17350	0.13	-0.4
1,671,160	-		BBR_RS17350	0.15	-0.5
1,671,160	-		BBR_RS17350	0.15	-2.7
1,671,210	+		BBR_RS17350	0.22	-0.7
1,671,221	+		BBR_RS17350	0.24	-0.1
1,671,284	+		BBR_RS17350	0.33	-1.8
1,671,308	-		BBR_RS17350	0.37	-1.6
1,671,329	-		BBR_RS17350	0.40	+1.2
1,671,329	-		BBR_RS17350	0.40	-2.9
1,671,373	+		BBR_RS17350	0.47	+0.0
1,671,378	+		BBR_RS17350	0.48	+0.0
1,671,407	-		BBR_RS17350	0.52	-2.8
1,671,425	+		BBR_RS17350	0.55	-0.2
1,671,436	+		BBR_RS17350	0.57	+0.0
1,671,461	+		BBR_RS17350	0.60	-0.4
1,671,466	+		BBR_RS17350	0.61	-0.8
1,671,511	+		BBR_RS17350	0.68	-0.7
1,671,553	-		BBR_RS17350	0.74	-3.3
1,671,625	+		BBR_RS17350	0.85	-2.5
1,671,625	+		BBR_RS17350	0.85	-0.9
1,671,675	+				+0.1
1,671,699	+				+0.9