Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12645

Experiment: CDM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12640 and BBR_RS12645 are separated by 4 nucleotidesBBR_RS12645 and BBR_RS12650 are separated by 23 nucleotides BBR_RS12640: BBR_RS12640 - glycosyl transferase, at 592,181 to 593,221 _RS12640 BBR_RS12645: BBR_RS12645 - acyltransferase, at 593,226 to 593,939 _RS12645 BBR_RS12650: BBR_RS12650 - polysaccharide pyruvyl transferase family protein, at 593,963 to 595,072 _RS12650 Position (kb) 593 594Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 592.228 kb on + strandat 592.228 kb on + strandat 592.258 kb on + strandat 592.266 kb on - strandat 592.266 kb on - strandat 592.292 kb on - strand, within BBR_RS12640at 592.293 kb on + strand, within BBR_RS12640at 592.294 kb on + strand, within BBR_RS12640at 592.302 kb on - strand, within BBR_RS12640at 592.337 kb on + strand, within BBR_RS12640at 592.337 kb on + strand, within BBR_RS12640at 592.338 kb on - strand, within BBR_RS12640at 592.345 kb on - strand, within BBR_RS12640at 592.350 kb on + strand, within BBR_RS12640at 592.355 kb on - strand, within BBR_RS12640at 592.357 kb on + strand, within BBR_RS12640at 592.357 kb on + strand, within BBR_RS12640at 592.357 kb on + strand, within BBR_RS12640at 592.357 kb on - strand, within BBR_RS12640at 592.358 kb on - strand, within BBR_RS12640at 592.358 kb on - strand, within BBR_RS12640at 592.358 kb on - strand, within BBR_RS12640at 592.358 kb on - strand, within BBR_RS12640at 592.362 kb on + strand, within BBR_RS12640at 592.362 kb on + strand, within BBR_RS12640at 592.362 kb on + strand, within BBR_RS12640at 592.362 kb on + strand, within BBR_RS12640at 592.362 kb on + strand, within BBR_RS12640at 592.369 kb on + strand, within BBR_RS12640at 592.370 kb on - strand, within BBR_RS12640at 592.370 kb on - strand, within BBR_RS12640at 592.372 kb on + strand, within BBR_RS12640at 592.375 kb on - strand, within BBR_RS12640at 592.388 kb on + strand, within BBR_RS12640at 592.388 kb on + strand, within BBR_RS12640at 592.396 kb on - strand, within BBR_RS12640at 592.423 kb on - strand, within BBR_RS12640at 592.432 kb on + strand, within BBR_RS12640at 592.442 kb on + strand, within BBR_RS12640at 592.442 kb on + strand, within BBR_RS12640at 592.450 kb on - strand, within BBR_RS12640at 592.477 kb on + strand, within BBR_RS12640at 592.485 kb on + strand, within BBR_RS12640at 592.485 kb on - strand, within BBR_RS12640at 592.486 kb on - strand, within BBR_RS12640at 592.506 kb on + strand, within BBR_RS12640at 592.540 kb on - strand, within BBR_RS12640at 592.588 kb on + strand, within BBR_RS12640at 592.593 kb on + strand, within BBR_RS12640at 592.604 kb on + strand, within BBR_RS12640at 592.614 kb on + strand, within BBR_RS12640at 592.624 kb on + strand, within BBR_RS12640at 592.624 kb on + strand, within BBR_RS12640at 592.631 kb on - strand, within BBR_RS12640at 592.634 kb on + strand, within BBR_RS12640at 592.650 kb on + strand, within BBR_RS12640at 592.650 kb on + strand, within BBR_RS12640at 592.650 kb on + strand, within BBR_RS12640at 592.658 kb on - strand, within BBR_RS12640at 592.675 kb on + strand, within BBR_RS12640at 592.713 kb on - strand, within BBR_RS12640at 592.719 kb on + strand, within BBR_RS12640at 592.727 kb on + strand, within BBR_RS12640at 592.727 kb on + strand, within BBR_RS12640at 592.727 kb on + strand, within BBR_RS12640at 592.727 kb on + strand, within BBR_RS12640at 592.727 kb on + strand, within BBR_RS12640at 592.735 kb on - strand, within BBR_RS12640at 592.735 kb on - strand, within BBR_RS12640at 592.753 kb on + strand, within BBR_RS12640at 592.780 kb on - strand, within BBR_RS12640at 592.853 kb on + strand, within BBR_RS12640at 592.885 kb on + strand, within BBR_RS12640at 592.898 kb on + strand, within BBR_RS12640at 592.908 kb on + strand, within BBR_RS12640at 592.908 kb on + strand, within BBR_RS12640at 592.916 kb on - strand, within BBR_RS12640at 592.916 kb on - strand, within BBR_RS12640at 592.920 kb on + strand, within BBR_RS12640at 592.920 kb on + strand, within BBR_RS12640at 592.922 kb on + strand, within BBR_RS12640at 592.928 kb on - strand, within BBR_RS12640at 592.936 kb on - strand, within BBR_RS12640at 592.944 kb on + strand, within BBR_RS12640at 592.954 kb on + strand, within BBR_RS12640at 592.984 kb on + strand, within BBR_RS12640at 592.997 kb on - strand, within BBR_RS12640at 593.023 kb on - strand, within BBR_RS12640at 593.025 kb on - strand, within BBR_RS12640at 593.085 kb on + strand, within BBR_RS12640at 593.085 kb on + strand, within BBR_RS12640at 593.106 kb on + strand, within BBR_RS12640at 593.113 kb on + strand, within BBR_RS12640at 593.137 kb on + strandat 593.144 kb on - strandat 593.145 kb on - strandat 593.145 kb on - strandat 593.145 kb on - strandat 593.151 kb on - strandat 593.164 kb on + strandat 593.164 kb on + strandat 593.164 kb on + strandat 593.164 kb on + strandat 593.170 kb on - strandat 593.170 kb on - strandat 593.170 kb on - strandat 593.170 kb on - strandat 593.170 kb on - strandat 593.172 kb on + strandat 593.172 kb on - strandat 593.172 kb on - strandat 593.172 kb on - strandat 593.172 kb on - strandat 593.172 kb on - strandat 593.172 kb on - strandat 593.172 kb on - strandat 593.178 kb on - strandat 593.178 kb on - strandat 593.212 kb on + strandat 593.220 kb on - strandat 593.272 kb on - strandat 593.310 kb on + strand, within BBR_RS12645at 593.325 kb on - strand, within BBR_RS12645at 593.334 kb on + strand, within BBR_RS12645at 593.350 kb on + strand, within BBR_RS12645at 593.376 kb on - strand, within BBR_RS12645at 593.403 kb on + strand, within BBR_RS12645at 593.411 kb on - strand, within BBR_RS12645at 593.435 kb on - strand, within BBR_RS12645at 593.439 kb on + strand, within BBR_RS12645at 593.439 kb on + strand, within BBR_RS12645at 593.439 kb on + strand, within BBR_RS12645at 593.439 kb on + strand, within BBR_RS12645at 593.439 kb on + strand, within BBR_RS12645at 593.439 kb on + strand, within BBR_RS12645at 593.439 kb on + strand, within BBR_RS12645at 593.447 kb on - strand, within BBR_RS12645at 593.454 kb on - strand, within BBR_RS12645at 593.478 kb on + strand, within BBR_RS12645at 593.478 kb on + strand, within BBR_RS12645at 593.486 kb on - strand, within BBR_RS12645at 593.491 kb on - strand, within BBR_RS12645at 593.526 kb on + strand, within BBR_RS12645at 593.587 kb on + strand, within BBR_RS12645at 593.620 kb on + strand, within BBR_RS12645at 593.624 kb on + strand, within BBR_RS12645at 593.629 kb on - strand, within BBR_RS12645at 593.709 kb on + strand, within BBR_RS12645at 593.749 kb on + strand, within BBR_RS12645at 593.749 kb on + strand, within BBR_RS12645at 593.757 kb on - strand, within BBR_RS12645at 593.878 kb on - strandat 593.888 kb on - strandat 593.895 kb on + strandat 593.910 kb on + strandat 593.918 kb on + strandat 593.967 kb on - strandat 593.971 kb on + strandat 593.971 kb on + strandat 593.971 kb on + strandat 594.022 kb on + strandat 594.029 kb on + strandat 594.029 kb on + strandat 594.032 kb on - strandat 594.044 kb on - strandat 594.046 kb on + strandat 594.049 kb on + strandat 594.051 kb on + strandat 594.059 kb on - strandat 594.070 kb on + strandat 594.071 kb on - strandat 594.071 kb on - strandat 594.079 kb on - strand, within BBR_RS12650at 594.094 kb on - strand, within BBR_RS12650at 594.102 kb on - strand, within BBR_RS12650at 594.102 kb on - strand, within BBR_RS12650at 594.112 kb on + strand, within BBR_RS12650at 594.120 kb on - strand, within BBR_RS12650at 594.120 kb on - strand, within BBR_RS12650at 594.138 kb on - strand, within BBR_RS12650at 594.138 kb on - strand, within BBR_RS12650at 594.166 kb on + strand, within BBR_RS12650at 594.214 kb on + strand, within BBR_RS12650at 594.231 kb on + strand, within BBR_RS12650at 594.239 kb on - strand, within BBR_RS12650at 594.256 kb on + strand, within BBR_RS12650at 594.287 kb on + strand, within BBR_RS12650at 594.313 kb on + strand, within BBR_RS12650at 594.313 kb on + strand, within BBR_RS12650at 594.315 kb on - strand, within BBR_RS12650at 594.315 kb on - strand, within BBR_RS12650at 594.321 kb on + strand, within BBR_RS12650at 594.362 kb on + strand, within BBR_RS12650at 594.381 kb on + strand, within BBR_RS12650at 594.458 kb on + strand, within BBR_RS12650at 594.466 kb on + strand, within BBR_RS12650at 594.485 kb on - strand, within BBR_RS12650at 594.489 kb on + strand, within BBR_RS12650at 594.510 kb on + strand, within BBR_RS12650at 594.515 kb on + strand, within BBR_RS12650at 594.523 kb on - strand, within BBR_RS12650at 594.538 kb on + strand, within BBR_RS12650at 594.564 kb on - strand, within BBR_RS12650at 594.596 kb on + strand, within BBR_RS12650at 594.604 kb on - strand, within BBR_RS12650at 594.637 kb on - strand, within BBR_RS12650at 594.641 kb on + strand, within BBR_RS12650at 594.649 kb on - strand, within BBR_RS12650at 594.649 kb on - strand, within BBR_RS12650at 594.685 kb on + strand, within BBR_RS12650at 594.685 kb on + strand, within BBR_RS12650at 594.685 kb on + strand, within BBR_RS12650at 594.685 kb on + strand, within BBR_RS12650at 594.685 kb on + strand, within BBR_RS12650at 594.752 kb on + strand, within BBR_RS12650at 594.752 kb on + strand, within BBR_RS12650at 594.754 kb on + strand, within BBR_RS12650at 594.755 kb on + strand, within BBR_RS12650at 594.762 kb on - strand, within BBR_RS12650at 594.762 kb on - strand, within BBR_RS12650at 594.762 kb on - strand, within BBR_RS12650at 594.763 kb on - strand, within BBR_RS12650at 594.784 kb on + strand, within BBR_RS12650at 594.816 kb on + strand, within BBR_RS12650at 594.816 kb on + strand, within BBR_RS12650at 594.824 kb on - strand, within BBR_RS12650at 594.825 kb on + strand, within BBR_RS12650at 594.831 kb on - strand, within BBR_RS12650at 594.831 kb on - strand, within BBR_RS12650at 594.833 kb on + strand, within BBR_RS12650at 594.906 kb on - strand, within BBR_RS12650at 594.912 kb on + strand, within BBR_RS12650

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1
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592,228 + -1.2
592,228 + -0.8
592,258 + -3.1
592,266 - -1.8
592,266 - -3.8
592,292 - BBR_RS12640 0.11 -1.9
592,293 + BBR_RS12640 0.11 -0.6
592,294 + BBR_RS12640 0.11 -0.6
592,302 - BBR_RS12640 0.12 -1.9
592,337 + BBR_RS12640 0.15 -2.9
592,337 + BBR_RS12640 0.15 +0.0
592,338 - BBR_RS12640 0.15 -3.0
592,345 - BBR_RS12640 0.16 -3.9
592,350 + BBR_RS12640 0.16 -3.0
592,355 - BBR_RS12640 0.17 -1.8
592,357 + BBR_RS12640 0.17 -2.1
592,357 + BBR_RS12640 0.17 -3.4
592,357 + BBR_RS12640 0.17 -0.8
592,357 - BBR_RS12640 0.17 -3.2
592,358 - BBR_RS12640 0.17 -3.8
592,358 - BBR_RS12640 0.17 -2.5
592,358 - BBR_RS12640 0.17 -2.0
592,358 - BBR_RS12640 0.17 -1.9
592,362 + BBR_RS12640 0.17 -3.9
592,362 + BBR_RS12640 0.17 -3.2
592,362 + BBR_RS12640 0.17 -1.7
592,362 + BBR_RS12640 0.17 -1.6
592,362 + BBR_RS12640 0.17 -0.3
592,369 + BBR_RS12640 0.18 -2.7
592,370 - BBR_RS12640 0.18 -2.5
592,370 - BBR_RS12640 0.18 -3.7
592,372 + BBR_RS12640 0.18 -0.2
592,375 - BBR_RS12640 0.19 -2.0
592,388 + BBR_RS12640 0.20 -3.5
592,388 + BBR_RS12640 0.20 -0.6
592,396 - BBR_RS12640 0.21 -1.4
592,423 - BBR_RS12640 0.23 +0.5
592,432 + BBR_RS12640 0.24 -2.3
592,442 + BBR_RS12640 0.25 -0.4
592,442 + BBR_RS12640 0.25 -0.2
592,450 - BBR_RS12640 0.26 -2.6
592,477 + BBR_RS12640 0.28 -1.3
592,485 + BBR_RS12640 0.29 -2.6
592,485 - BBR_RS12640 0.29 -2.4
592,486 - BBR_RS12640 0.29 -0.9
592,506 + BBR_RS12640 0.31 -2.5
592,540 - BBR_RS12640 0.34 -2.7
592,588 + BBR_RS12640 0.39 -3.2
592,593 + BBR_RS12640 0.40 -2.4
592,604 + BBR_RS12640 0.41 -3.6
592,614 + BBR_RS12640 0.42 -2.4
592,624 + BBR_RS12640 0.43 -1.8
592,624 + BBR_RS12640 0.43 -3.0
592,631 - BBR_RS12640 0.43 -2.7
592,634 + BBR_RS12640 0.44 -1.8
592,650 + BBR_RS12640 0.45 -2.5
592,650 + BBR_RS12640 0.45 -2.6
592,650 + BBR_RS12640 0.45 -3.3
592,658 - BBR_RS12640 0.46 -3.0
592,675 + BBR_RS12640 0.47 -3.0
592,713 - BBR_RS12640 0.51 -3.2
592,719 + BBR_RS12640 0.52 -2.4
592,727 + BBR_RS12640 0.52 -3.2
592,727 + BBR_RS12640 0.52 -4.7
592,727 + BBR_RS12640 0.52 -3.5
592,727 + BBR_RS12640 0.52 -1.8
592,727 + BBR_RS12640 0.52 -2.2
592,735 - BBR_RS12640 0.53 -2.4
592,735 - BBR_RS12640 0.53 -2.1
592,753 + BBR_RS12640 0.55 -0.0
592,780 - BBR_RS12640 0.58 -2.4
592,853 + BBR_RS12640 0.65 -1.0
592,885 + BBR_RS12640 0.68 -1.7
592,898 + BBR_RS12640 0.69 -1.8
592,908 + BBR_RS12640 0.70 -0.2
592,908 + BBR_RS12640 0.70 -1.8
592,916 - BBR_RS12640 0.71 -3.8
592,916 - BBR_RS12640 0.71 -1.9
592,920 + BBR_RS12640 0.71 -1.4
592,920 + BBR_RS12640 0.71 -3.1
592,922 + BBR_RS12640 0.71 -4.0
592,928 - BBR_RS12640 0.72 -2.9
592,936 - BBR_RS12640 0.73 -1.5
592,944 + BBR_RS12640 0.73 -2.0
592,954 + BBR_RS12640 0.74 -0.2
592,984 + BBR_RS12640 0.77 -2.9
592,997 - BBR_RS12640 0.78 -1.0
593,023 - BBR_RS12640 0.81 -3.7
593,025 - BBR_RS12640 0.81 -1.0
593,085 + BBR_RS12640 0.87 -1.2
593,085 + BBR_RS12640 0.87 -0.0
593,106 + BBR_RS12640 0.89 -0.1
593,113 + BBR_RS12640 0.90 -1.1
593,137 + -2.3
593,144 - -3.3
593,145 - -4.1
593,145 - -2.7
593,145 - -2.2
593,151 - -3.5
593,164 + -1.6
593,164 + -1.5
593,164 + -0.4
593,164 + -1.7
593,170 - -1.8
593,170 - -3.1
593,170 - -3.2
593,170 - -2.2
593,170 - -1.9
593,172 + -1.8
593,172 - -2.3
593,172 - -1.4
593,172 - -2.7
593,172 - -2.6
593,172 - +0.3
593,172 - -0.9
593,172 - -3.4
593,178 - -2.0
593,178 - -3.8
593,212 + -4.5
593,220 - -0.8
593,272 - -3.1
593,310 + BBR_RS12645 0.12 -2.9
593,325 - BBR_RS12645 0.14 -2.2
593,334 + BBR_RS12645 0.15 -3.0
593,350 + BBR_RS12645 0.17 -3.5
593,376 - BBR_RS12645 0.21 -3.2
593,403 + BBR_RS12645 0.25 -3.4
593,411 - BBR_RS12645 0.26 -2.9
593,435 - BBR_RS12645 0.29 -1.1
593,439 + BBR_RS12645 0.30 -0.9
593,439 + BBR_RS12645 0.30 -2.9
593,439 + BBR_RS12645 0.30 -2.0
593,439 + BBR_RS12645 0.30 -2.1
593,439 + BBR_RS12645 0.30 -0.8
593,439 + BBR_RS12645 0.30 -2.8
593,439 + BBR_RS12645 0.30 -2.4
593,447 - BBR_RS12645 0.31 -0.7
593,454 - BBR_RS12645 0.32 -1.7
593,478 + BBR_RS12645 0.35 -1.4
593,478 + BBR_RS12645 0.35 -1.4
593,486 - BBR_RS12645 0.36 -2.7
593,491 - BBR_RS12645 0.37 -3.0
593,526 + BBR_RS12645 0.42 -2.1
593,587 + BBR_RS12645 0.51 -1.6
593,620 + BBR_RS12645 0.55 +0.7
593,624 + BBR_RS12645 0.56 -1.4
593,629 - BBR_RS12645 0.56 -2.8
593,709 + BBR_RS12645 0.68 -2.4
593,749 + BBR_RS12645 0.73 -1.1
593,749 + BBR_RS12645 0.73 -2.4
593,757 - BBR_RS12645 0.74 -2.4
593,878 - -3.6
593,888 - -1.7
593,895 + -2.5
593,910 + -2.0
593,918 + -1.2
593,967 - -1.1
593,971 + -3.8
593,971 + -2.9
593,971 + -0.1
594,022 + -1.5
594,029 + -1.9
594,029 + -3.5
594,032 - -3.3
594,044 - -1.4
594,046 + -1.1
594,049 + -1.9
594,051 + -2.5
594,059 - -1.1
594,070 + -2.1
594,071 - -2.6
594,071 - -2.4
594,079 - BBR_RS12650 0.10 -2.6
594,094 - BBR_RS12650 0.12 -1.7
594,102 - BBR_RS12650 0.13 -1.2
594,102 - BBR_RS12650 0.13 -3.8
594,112 + BBR_RS12650 0.13 -2.0
594,120 - BBR_RS12650 0.14 -1.9
594,120 - BBR_RS12650 0.14 -1.7
594,138 - BBR_RS12650 0.16 -1.3
594,138 - BBR_RS12650 0.16 -2.0
594,166 + BBR_RS12650 0.18 -4.2
594,214 + BBR_RS12650 0.23 -0.6
594,231 + BBR_RS12650 0.24 -3.4
594,239 - BBR_RS12650 0.25 -1.4
594,256 + BBR_RS12650 0.26 -1.4
594,287 + BBR_RS12650 0.29 -2.1
594,313 + BBR_RS12650 0.32 +0.0
594,313 + BBR_RS12650 0.32 -0.1
594,315 - BBR_RS12650 0.32 -0.6
594,315 - BBR_RS12650 0.32 -1.6
594,321 + BBR_RS12650 0.32 -0.7
594,362 + BBR_RS12650 0.36 -0.4
594,381 + BBR_RS12650 0.38 -1.5
594,458 + BBR_RS12650 0.45 -1.6
594,466 + BBR_RS12650 0.45 -0.6
594,485 - BBR_RS12650 0.47 +1.1
594,489 + BBR_RS12650 0.47 -1.1
594,510 + BBR_RS12650 0.49 -2.7
594,515 + BBR_RS12650 0.50 -1.7
594,523 - BBR_RS12650 0.50 -3.3
594,538 + BBR_RS12650 0.52 -1.7
594,564 - BBR_RS12650 0.54 -1.6
594,596 + BBR_RS12650 0.57 -3.1
594,604 - BBR_RS12650 0.58 -3.0
594,637 - BBR_RS12650 0.61 +0.0
594,641 + BBR_RS12650 0.61 -1.0
594,649 - BBR_RS12650 0.62 -1.7
594,649 - BBR_RS12650 0.62 -3.2
594,685 + BBR_RS12650 0.65 +0.1
594,685 + BBR_RS12650 0.65 -1.0
594,685 + BBR_RS12650 0.65 -1.2
594,685 + BBR_RS12650 0.65 -2.0
594,685 + BBR_RS12650 0.65 -1.8
594,752 + BBR_RS12650 0.71 +0.1
594,752 + BBR_RS12650 0.71 -2.7
594,754 + BBR_RS12650 0.71 -2.0
594,755 + BBR_RS12650 0.71 +0.2
594,762 - BBR_RS12650 0.72 -3.0
594,762 - BBR_RS12650 0.72 -2.9
594,762 - BBR_RS12650 0.72 -3.8
594,763 - BBR_RS12650 0.72 -2.6
594,784 + BBR_RS12650 0.74 -2.1
594,816 + BBR_RS12650 0.77 +0.2
594,816 + BBR_RS12650 0.77 -2.1
594,824 - BBR_RS12650 0.78 -2.5
594,825 + BBR_RS12650 0.78 -0.1
594,831 - BBR_RS12650 0.78 -1.6
594,831 - BBR_RS12650 0.78 -2.7
594,833 + BBR_RS12650 0.78 -3.5
594,906 - BBR_RS12650 0.85 -1.2
594,912 + BBR_RS12650 0.85 -0.7

Or see this region's nucleotide sequence