Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22355

Experiment: Trans-2-methyl-2-butenoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22345 and ABZR87_RS22350 overlap by 1 nucleotidesABZR87_RS22350 and ABZR87_RS22355 are separated by 144 nucleotidesABZR87_RS22355 and ABZR87_RS22360 are separated by 19 nucleotides ABZR87_RS22345: ABZR87_RS22345 - nucleotidyltransferase family protein, at 1,372,160 to 1,372,756 _RS22345 ABZR87_RS22350: ABZR87_RS22350 - organic hydroperoxide resistance protein, at 1,372,756 to 1,373,190 _RS22350 ABZR87_RS22355: ABZR87_RS22355 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 1,373,335 to 1,375,578 _RS22355 ABZR87_RS22360: ABZR87_RS22360 - (2Fe-2S)-binding protein, at 1,375,598 to 1,376,056 _RS22360 Position (kb) 1373 1374 1375 1376Strain fitness (log2 ratio) -2 -1 0 1 2at 1372.812 kb on - strand, within ABZR87_RS22350at 1373.021 kb on + strand, within ABZR87_RS22350at 1373.055 kb on + strand, within ABZR87_RS22350at 1373.056 kb on - strand, within ABZR87_RS22350at 1373.056 kb on - strand, within ABZR87_RS22350at 1373.056 kb on - strand, within ABZR87_RS22350at 1373.171 kb on + strandat 1373.171 kb on + strandat 1373.171 kb on + strandat 1373.171 kb on + strandat 1373.172 kb on - strandat 1373.172 kb on - strandat 1373.172 kb on - strandat 1373.172 kb on - strandat 1373.172 kb on - strandat 1373.172 kb on - strandat 1373.178 kb on + strandat 1373.178 kb on + strandat 1373.179 kb on - strandat 1373.179 kb on - strandat 1373.259 kb on + strandat 1373.260 kb on - strandat 1373.260 kb on - strandat 1373.336 kb on + strandat 1373.336 kb on + strandat 1373.336 kb on + strandat 1373.336 kb on + strandat 1373.336 kb on + strandat 1373.337 kb on - strandat 1373.337 kb on - strandat 1373.337 kb on - strandat 1373.337 kb on - strandat 1373.337 kb on - strandat 1373.337 kb on - strandat 1373.590 kb on + strand, within ABZR87_RS22355at 1373.590 kb on + strand, within ABZR87_RS22355at 1373.711 kb on + strand, within ABZR87_RS22355at 1373.711 kb on + strand, within ABZR87_RS22355at 1373.711 kb on + strand, within ABZR87_RS22355at 1373.711 kb on + strand, within ABZR87_RS22355at 1373.711 kb on + strand, within ABZR87_RS22355at 1373.711 kb on + strand, within ABZR87_RS22355at 1373.711 kb on + strand, within ABZR87_RS22355at 1373.711 kb on + strand, within ABZR87_RS22355at 1373.712 kb on - strand, within ABZR87_RS22355at 1373.712 kb on - strand, within ABZR87_RS22355at 1373.924 kb on + strand, within ABZR87_RS22355at 1373.925 kb on - strand, within ABZR87_RS22355at 1373.925 kb on - strand, within ABZR87_RS22355at 1373.925 kb on - strand, within ABZR87_RS22355at 1373.925 kb on - strand, within ABZR87_RS22355at 1373.932 kb on - strand, within ABZR87_RS22355at 1374.014 kb on + strand, within ABZR87_RS22355at 1374.015 kb on - strand, within ABZR87_RS22355at 1374.015 kb on - strand, within ABZR87_RS22355at 1374.188 kb on + strand, within ABZR87_RS22355at 1374.191 kb on + strand, within ABZR87_RS22355at 1374.191 kb on + strand, within ABZR87_RS22355at 1374.261 kb on - strand, within ABZR87_RS22355at 1374.261 kb on - strand, within ABZR87_RS22355at 1374.293 kb on + strand, within ABZR87_RS22355at 1374.513 kb on - strand, within ABZR87_RS22355at 1374.614 kb on + strand, within ABZR87_RS22355at 1374.614 kb on + strand, within ABZR87_RS22355at 1374.614 kb on + strand, within ABZR87_RS22355at 1374.614 kb on + strand, within ABZR87_RS22355at 1374.615 kb on - strand, within ABZR87_RS22355at 1374.803 kb on + strand, within ABZR87_RS22355at 1375.023 kb on - strand, within ABZR87_RS22355at 1375.023 kb on - strand, within ABZR87_RS22355at 1375.023 kb on - strand, within ABZR87_RS22355at 1375.023 kb on - strand, within ABZR87_RS22355at 1375.023 kb on - strand, within ABZR87_RS22355at 1375.148 kb on + strand, within ABZR87_RS22355at 1375.148 kb on + strand, within ABZR87_RS22355at 1375.217 kb on + strand, within ABZR87_RS22355at 1375.217 kb on + strand, within ABZR87_RS22355at 1375.217 kb on + strand, within ABZR87_RS22355at 1375.217 kb on + strand, within ABZR87_RS22355at 1375.217 kb on + strand, within ABZR87_RS22355at 1375.217 kb on + strand, within ABZR87_RS22355at 1375.218 kb on - strand, within ABZR87_RS22355at 1375.572 kb on + strandat 1375.572 kb on + strandat 1375.647 kb on + strand, within ABZR87_RS22360at 1375.647 kb on + strand, within ABZR87_RS22360at 1375.647 kb on + strand, within ABZR87_RS22360at 1375.648 kb on - strand, within ABZR87_RS22360at 1375.648 kb on - strand, within ABZR87_RS22360at 1375.648 kb on - strand, within ABZR87_RS22360at 1376.099 kb on + strandat 1376.099 kb on + strandat 1376.100 kb on - strandat 1376.112 kb on - strandat 1376.112 kb on - strandat 1376.112 kb on - strandat 1376.141 kb on - strandat 1376.141 kb on - strandat 1376.141 kb on - strandat 1376.143 kb on + strandat 1376.143 kb on + strandat 1376.143 kb on + strandat 1376.144 kb on - strandat 1376.144 kb on - strandat 1376.144 kb on - strandat 1376.144 kb on - strandat 1376.144 kb on - strandat 1376.378 kb on + strandat 1376.378 kb on + strandat 1376.390 kb on + strandat 1376.391 kb on - strandat 1376.391 kb on - strandat 1376.393 kb on + strandat 1376.393 kb on + strandat 1376.393 kb on + strandat 1376.394 kb on - strandat 1376.394 kb on - strandat 1376.394 kb on - strandat 1376.394 kb on - strandat 1376.401 kb on + strandat 1376.402 kb on - strandat 1376.456 kb on + strandat 1376.456 kb on + strandat 1376.541 kb on + strandat 1376.542 kb on - strandat 1376.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trans-2-methyl-2-butenoic (C)
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1,372,812 - ABZR87_RS22350 0.13 +0.1
1,373,021 + ABZR87_RS22350 0.61 +1.2
1,373,055 + ABZR87_RS22350 0.69 +0.5
1,373,056 - ABZR87_RS22350 0.69 +0.6
1,373,056 - ABZR87_RS22350 0.69 -0.1
1,373,056 - ABZR87_RS22350 0.69 -0.4
1,373,171 + -0.1
1,373,171 + -0.6
1,373,171 + -0.2
1,373,171 + +0.2
1,373,172 - -0.8
1,373,172 - +1.5
1,373,172 - +0.1
1,373,172 - +0.4
1,373,172 - -1.5
1,373,172 - +0.2
1,373,178 + +0.4
1,373,178 + -0.1
1,373,179 - -0.0
1,373,179 - +0.0
1,373,259 + +0.4
1,373,260 - +0.8
1,373,260 - -0.4
1,373,336 + +0.1
1,373,336 + -0.7
1,373,336 + -0.2
1,373,336 + +0.0
1,373,336 + +1.3
1,373,337 - -0.1
1,373,337 - +0.3
1,373,337 - -0.2
1,373,337 - +0.2
1,373,337 - +0.2
1,373,337 - +0.3
1,373,590 + ABZR87_RS22355 0.11 -0.2
1,373,590 + ABZR87_RS22355 0.11 -0.4
1,373,711 + ABZR87_RS22355 0.17 +0.5
1,373,711 + ABZR87_RS22355 0.17 -1.0
1,373,711 + ABZR87_RS22355 0.17 -0.3
1,373,711 + ABZR87_RS22355 0.17 -0.3
1,373,711 + ABZR87_RS22355 0.17 +0.7
1,373,711 + ABZR87_RS22355 0.17 +0.4
1,373,711 + ABZR87_RS22355 0.17 +0.1
1,373,711 + ABZR87_RS22355 0.17 -0.1
1,373,712 - ABZR87_RS22355 0.17 +0.3
1,373,712 - ABZR87_RS22355 0.17 +0.1
1,373,924 + ABZR87_RS22355 0.26 +0.7
1,373,925 - ABZR87_RS22355 0.26 -0.2
1,373,925 - ABZR87_RS22355 0.26 +0.0
1,373,925 - ABZR87_RS22355 0.26 -0.2
1,373,925 - ABZR87_RS22355 0.26 +0.6
1,373,932 - ABZR87_RS22355 0.27 -1.0
1,374,014 + ABZR87_RS22355 0.30 +0.0
1,374,015 - ABZR87_RS22355 0.30 +0.5
1,374,015 - ABZR87_RS22355 0.30 -0.2
1,374,188 + ABZR87_RS22355 0.38 -0.9
1,374,191 + ABZR87_RS22355 0.38 +0.5
1,374,191 + ABZR87_RS22355 0.38 -0.3
1,374,261 - ABZR87_RS22355 0.41 +0.7
1,374,261 - ABZR87_RS22355 0.41 +0.6
1,374,293 + ABZR87_RS22355 0.43 +0.2
1,374,513 - ABZR87_RS22355 0.52 -0.2
1,374,614 + ABZR87_RS22355 0.57 +2.1
1,374,614 + ABZR87_RS22355 0.57 -0.1
1,374,614 + ABZR87_RS22355 0.57 +0.5
1,374,614 + ABZR87_RS22355 0.57 -0.4
1,374,615 - ABZR87_RS22355 0.57 +0.1
1,374,803 + ABZR87_RS22355 0.65 -1.3
1,375,023 - ABZR87_RS22355 0.75 +1.5
1,375,023 - ABZR87_RS22355 0.75 +0.1
1,375,023 - ABZR87_RS22355 0.75 +0.7
1,375,023 - ABZR87_RS22355 0.75 +0.5
1,375,023 - ABZR87_RS22355 0.75 +0.1
1,375,148 + ABZR87_RS22355 0.81 -0.3
1,375,148 + ABZR87_RS22355 0.81 -0.1
1,375,217 + ABZR87_RS22355 0.84 -0.3
1,375,217 + ABZR87_RS22355 0.84 -0.2
1,375,217 + ABZR87_RS22355 0.84 +0.3
1,375,217 + ABZR87_RS22355 0.84 +0.4
1,375,217 + ABZR87_RS22355 0.84 -1.1
1,375,217 + ABZR87_RS22355 0.84 +0.7
1,375,218 - ABZR87_RS22355 0.84 +0.2
1,375,572 + -0.5
1,375,572 + +0.0
1,375,647 + ABZR87_RS22360 0.11 -0.9
1,375,647 + ABZR87_RS22360 0.11 -0.4
1,375,647 + ABZR87_RS22360 0.11 +0.3
1,375,648 - ABZR87_RS22360 0.11 -0.4
1,375,648 - ABZR87_RS22360 0.11 -0.9
1,375,648 - ABZR87_RS22360 0.11 -0.1
1,376,099 + +0.4
1,376,099 + +0.9
1,376,100 - +0.6
1,376,112 - -0.1
1,376,112 - -0.9
1,376,112 - +0.6
1,376,141 - +0.5
1,376,141 - +0.3
1,376,141 - +0.2
1,376,143 + +0.9
1,376,143 + +0.6
1,376,143 + -2.4
1,376,144 - -1.0
1,376,144 - +0.2
1,376,144 - +0.8
1,376,144 - -0.2
1,376,144 - -0.1
1,376,378 + -0.6
1,376,378 + +0.7
1,376,390 + +0.3
1,376,391 - -0.1
1,376,391 - +0.3
1,376,393 + +0.5
1,376,393 + -0.3
1,376,393 + +0.1
1,376,394 - -0.2
1,376,394 - +1.1
1,376,394 - -0.3
1,376,394 - +0.3
1,376,401 + -0.4
1,376,402 - -0.1
1,376,456 + +0.2
1,376,456 + +0.1
1,376,541 + +0.1
1,376,542 - -0.5
1,376,542 - -0.1

Or see this region's nucleotide sequence